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Commit 976d9e6e authored by cedrick's avatar cedrick
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remove string sample from survivor.wdl

parent ce0699c2
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......@@ -9,9 +9,7 @@ task Merge {
Int strandType = 1
Int distanceBySvSize = 0
Int minSize = 30
String sample
String outputPath
String memory = "24G"
String dockerImage = "quay.io/biocontainers/survivor:1.0.6--h6bb024c_0"
}
......@@ -49,7 +47,6 @@ task Merge {
strandType: {description: "A boolean to include strand type of an SV to be merged", category: "advanced"}
distanceBySvSize: {description: "A boolean to predict the pairwise distance between the SVs based on their size", category: "advanced"}
minSize: {description: "The mimimum size of SV to be merged", category: "advanced"}
sample: {description: "The name of the sample", category: "required"}
outputPath: {description: "The location the output VCF file should be written.", category: "common"}
memory: {description: "The memory required to run the programs", category: "advanced"}
dockerImage: {description: "The docker image used for this task. Changing this may result in errors which the developers may choose not to address.", category: "advanced"}
......
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