From 976d9e6e20d96d84ebfeaa32a0d677055e228ba7 Mon Sep 17 00:00:00 2001
From: cedrick <cagaser@outlook.com>
Date: Wed, 12 Feb 2020 13:25:13 +0100
Subject: [PATCH] remove string sample from survivor.wdl
---
survivor.wdl | 3 ---
1 file changed, 3 deletions(-)
diff --git a/survivor.wdl b/survivor.wdl
index 1311932..6824484 100644
--- a/survivor.wdl
+++ b/survivor.wdl
@@ -9,9 +9,7 @@ task Merge {
Int strandType = 1
Int distanceBySvSize = 0
Int minSize = 30
- String sample
String outputPath
-
String memory = "24G"
String dockerImage = "quay.io/biocontainers/survivor:1.0.6--h6bb024c_0"
}
@@ -49,7 +47,6 @@ task Merge {
strandType: {description: "A boolean to include strand type of an SV to be merged", category: "advanced"}
distanceBySvSize: {description: "A boolean to predict the pairwise distance between the SVs based on their size", category: "advanced"}
minSize: {description: "The mimimum size of SV to be merged", category: "advanced"}
- sample: {description: "The name of the sample", category: "required"}
outputPath: {description: "The location the output VCF file should be written.", category: "common"}
memory: {description: "The memory required to run the programs", category: "advanced"}
dockerImage: {description: "The docker image used for this task. Changing this may result in errors which the developers may choose not to address.", category: "advanced"}
--
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