From 89f4ea336ded80be0cc53337390cf055a1412c9b Mon Sep 17 00:00:00 2001
From: Ruben Vorderman <r.h.p.vorderman@lumc.nl>
Date: Mon, 7 May 2018 12:57:39 +0200
Subject: [PATCH] add input bam

---
 samtools.wdl | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/samtools.wdl b/samtools.wdl
index c9207d3..a1192ac 100644
--- a/samtools.wdl
+++ b/samtools.wdl
@@ -95,7 +95,7 @@ task fastq {
         ${true="-O" false="" outputQuality} \
         ${"-c " + compressionLevel} \
         ${"--threads " + totalThreads} \
-
+        ${inputBam}
     }
     output {
         File read1 = outputRead1
-- 
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