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Commit 826cbaf4 authored by JasperBoom's avatar JasperBoom
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Update versions.

parent 67116dfe
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......@@ -10,6 +10,8 @@ that users understand how the changes affect the new version.
version 5.0.0-dev
---------------------------
+ Update NanoPlot to version 1.32.1.
+ Update MultiQC to version 1.9.
+ Update CutAdapt to version 3.0.0.
+ Update StringTie to version 2.1.4.
+ Complete `parameter_meta` for tasks missing the outputs.
......
......@@ -33,7 +33,7 @@ task Indexing {
Int cores = 1
String memory = "4G"
Int timeMinutes = 10
String dockerImage = "quay.io/biocontainers/minimap2:2.17--h84994c4_0"
String dockerImage = "quay.io/biocontainers/minimap2:2.17--hed695b0_3"
}
command {
......@@ -100,7 +100,7 @@ task Mapping {
Int cores = 4
String memory = "30G"
Int timeMinutes = 1 + ceil(size(queryFile, "G") * 200 / cores)
String dockerImage = "quay.io/biocontainers/minimap2:2.17--h84994c4_0"
String dockerImage = "quay.io/biocontainers/minimap2:2.17--hed695b0_3"
}
command {
......
......@@ -58,7 +58,7 @@ task MultiQC {
String? memory
Int timeMinutes = 2 + ceil(size(reports, "G") * 8)
String dockerImage = "quay.io/biocontainers/multiqc:1.7--py_1"
String dockerImage = "quay.io/biocontainers/multiqc:1.9--py_1"
}
Int memoryGb = 2 + ceil(size(reports, "G"))
......
......@@ -42,7 +42,7 @@ task NanoPlot {
Int threads = 2
String memory = "2G"
Int timeMinutes = 15
String dockerImage = "quay.io/biocontainers/nanoplot:1.32.0--py_0"
String dockerImage = "quay.io/biocontainers/nanoplot:1.32.1--py_0"
}
Map[String, String] fileTypeOptions = {"fastq": "--fastq ", "fasta": "--fasta ", "fastq_rich": "--fastq_rich ", "fastq_minimal": "--fastq_minimal ", "summary": "--summary ", "bam": "--bam ", "ubam": "--ubam ", "cram": "--cram ", "pickle": "--pickle ", "feather": "--feather "}
......
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