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Created with Raphaël 2.2.016Jun30May8Apr18Mar987432125Feb2415141110928Jan27261918171411416Dec1514626Nov1715131211109829Oct28130Sep241723Aug20181029Jul2721201998752130Jun2928252221161514111072131May2825211920Apr1514131230Mar29252322191817118424Feb22211918169428Jan21158628Dec24221615119130Nov272625191712111096543230Oct2827262216151312987652129Sep24232116151411109742126Aug2420191817141312111076529Jul2827232221201716151397632adjust gridss threadsMake sure reportPath directory is createdvariousfixesvariousfixestypocopy paste erroradd task for sv type annotation of gridss resultsMerge pull request #300 from biowdl/fix_gridss_tbiMerge remote-tracking branch 'origin/develop' into fix_gridss_tbiupdate changelogrun tabix if vcf index is missing in gridssRemove duplicate options for markduplicatesfix copy-paste errorfix copy-paste error (orange docker image)fix cupGenerateReportfix CupGenerateReportAdd parameter_meta for Picard UmiAwareMarkDuplicatesWithMateCigarAdd parameter_meta for useSoftclippingforSupplementaryMerge pull request #297 from biowdl/addPicardDedupAdd missing whitespace.Merge branch 'develop' into addPicardDedupSlightly less records in RAMadd orange, cupGenerateReport and (hopefully) fix sage plotsupdate cuppa to 1.6Merge remote-tracking branch 'origin/hotfix' into sagefix health-checkerhotfixhotfixupdate protect to 2.0update virus-interpreter to 1.2typoadd linx visualisation outputadd LinxVisualisationsfix health checker outputfix linx output and health-checker commandfix some typosfix peach commandfix purple outputsfix copy paste errorfix Pave outputMerge remote-tracking branch 'origin/sage' into sagefix some issuesMerge pull request #299 from biowdl/sasc2164Add format parameter to parameter_meta