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biowdl
tasks
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7db296e7
Commit
7db296e7
authored
4 years ago
by
Ruben Vorderman
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resource requirements for multiqc
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889b444d
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@@ -51,11 +51,11 @@ task MultiQC {
Boolean megaQCUpload = false # This must be actively enabled in my opinion. The tools default is to upload.
File? config # A directory
String? clConfig
String memory = "4G"
Int timeMinutes = 120
String? memory
Int timeMinutes = 2 + ceil(size(reports, "G") * 8)
String dockerImage = "quay.io/biocontainers/multiqc:1.7--py_1"
}
Int memoryGb = 2 + ceil(size(reports, "G"))
# This is where the reports end up. It does not need to be changed by the
# user. It is full of symbolic links, so it is not of any use to the user
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@@ -132,7 +132,7 @@ task MultiQC {
}
runtime {
memory:
memory
memory:
select_first([memory, "~{memoryGb}G"])
time_minutes: timeMinutes
docker: dockerImage
}
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