diff --git a/multiqc.wdl b/multiqc.wdl index 6a967b3f18c0fcc49a81168b97c047cc1395de89..7dcf333eb0ba40a52d69d33e62352e22ee5ee4ec 100644 --- a/multiqc.wdl +++ b/multiqc.wdl @@ -51,11 +51,11 @@ task MultiQC { Boolean megaQCUpload = false # This must be actively enabled in my opinion. The tools default is to upload. File? config # A directory String? clConfig - - String memory = "4G" - Int timeMinutes = 120 + String? memory + Int timeMinutes = 2 + ceil(size(reports, "G") * 8) String dockerImage = "quay.io/biocontainers/multiqc:1.7--py_1" } + Int memoryGb = 2 + ceil(size(reports, "G")) # This is where the reports end up. It does not need to be changed by the # user. It is full of symbolic links, so it is not of any use to the user @@ -132,7 +132,7 @@ task MultiQC { } runtime { - memory: memory + memory: select_first([memory, "~{memoryGb}G"]) time_minutes: timeMinutes docker: dockerImage }