upgrade gridss to 2.12.2

gridss.wdl

@@ -34,7 +34,7 @@ task AnnotateInsertedSequence {
         Int threads = 8
         String javaXmx = "8G"
         String memory = "9G"
-        String dockerImage = "quay.io/biocontainers/gridss:2.11.1--hdfd78af_1"
+        String dockerImage = "quay.io/biocontainers/gridss:2.12.2--h270b39a_0"
         Int timeMinutes = 120
     }
 
@@ -96,7 +96,7 @@ task GRIDSS {
         Int jvmHeapSizeGb = 64
         Int threads = 8
         Int timeMinutes = ceil(4320 / threads) + 10
-        String dockerImage = "quay.io/biocontainers/gridss:2.11.1--hdfd78af_1"
+        String dockerImage = "quay.io/biocontainers/gridss:2.12.2--h270b39a_0"
     }
 
     command {
@@ -165,14 +165,14 @@ task GridssAnnotateVcfRepeatmasker {
 
         String memory = "25G"
         Int threads = 8
-        String dockerImage = "quay.io/biocontainers/gridss:2.11.1--hdfd78af_1"
+        String dockerImage = "quay.io/biocontainers/gridss:2.12.2--h270b39a_0"
         Int timeMinutes = 1440
     }
 
     command {
         gridss_annotate_vcf_repeatmasker \
         --output ~{outputPath} \
-        --jar /usr/local/share/gridss-2.12.0-1/gridss.jar \
+        --jar /usr/local/share/gridss-2.12.2-0/gridss.jar \
         -w . \
         -t ~{threads} \
         ~{gridssVcf}
@@ -213,7 +213,7 @@ task Virusbreakend {
 
         String memory = "75G"
         Int threads = 8
-        String dockerImage = "quay.io/biocontainers/gridss:2.11.1--hdfd78af_1"
+        String dockerImage = "quay.io/biocontainers/gridss:2.12.2--h270b39a_0"
         Int timeMinutes = 180
     }
 
@@ -226,7 +226,7 @@ task Virusbreakend {
         --workingdir . \
         --reference ~{referenceFasta} \
         --db virusbreakenddb \
-        --jar /usr/local/share/gridss-2.12.0-1/gridss.jar \
+        --jar /usr/local/share/gridss-2.12.2-0/gridss.jar \
         -t ~{threads} \
         ~{bam}
     }