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Commit 7a693a69 authored by Cats's avatar Cats
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remove rainfall plot output

parent 1be4badc
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......@@ -615,7 +615,6 @@ task Purple {
File segmentPlot = "~{outputDir}/plot/~{tumorName}.segment.png"
File somaticClonalityPlot = "~{outputDir}/plot/~{tumorName}.somatic.clonality.png"
File somaticPlot = "~{outputDir}/plot/~{tumorName}.somatic.png"
File somaticRainfallPlot = "~{outputDir}/plot/~{tumorName}.somatic.rainfall.png"
File purpleVersion = "~{outputDir}/purple.version"
File circosNormalRatio = "~{outputDir}/circos/~{normalName}.ratio.circos"
File circosConf = "~{outputDir}/circos/~{tumorName}.circos.conf"
......@@ -634,7 +633,7 @@ task Purple {
purpleSomaticVcf, purpleSomaticVcfIndex, purpleSvVcf, purpleSvVcfIndex,
purpleVersion, purpleGermlineVcf, purpleGermlineVcfIndex, driverCatalogGermlineTsv]
Array[File] plots = [circosPlot, copynumberPlot, inputPlot, mapPlot, purityRangePlot,
segmentPlot, somaticClonalityPlot, somaticPlot, somaticRainfallPlot]
segmentPlot, somaticClonalityPlot, somaticPlot]
Array[File] circos = [circosNormalRatio, circosConf, circosIndel, circosLink,
circosTumorRatio, circosGaps, circosBaf, circosCnv, circosInputConf, circosMap,
circosSnp]
......
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