From 7a693a69f9a59755d527d733946406eed3a2f124 Mon Sep 17 00:00:00 2001
From: DavyCats <davycats.dc@gmail.com>
Date: Tue, 22 Jun 2021 11:38:04 +0200
Subject: [PATCH] remove rainfall plot output
---
hmftools.wdl | 3 +--
1 file changed, 1 insertion(+), 2 deletions(-)
diff --git a/hmftools.wdl b/hmftools.wdl
index 868d03f..8e60351 100644
--- a/hmftools.wdl
+++ b/hmftools.wdl
@@ -615,7 +615,6 @@ task Purple {
File segmentPlot = "~{outputDir}/plot/~{tumorName}.segment.png"
File somaticClonalityPlot = "~{outputDir}/plot/~{tumorName}.somatic.clonality.png"
File somaticPlot = "~{outputDir}/plot/~{tumorName}.somatic.png"
- File somaticRainfallPlot = "~{outputDir}/plot/~{tumorName}.somatic.rainfall.png"
File purpleVersion = "~{outputDir}/purple.version"
File circosNormalRatio = "~{outputDir}/circos/~{normalName}.ratio.circos"
File circosConf = "~{outputDir}/circos/~{tumorName}.circos.conf"
@@ -634,7 +633,7 @@ task Purple {
purpleSomaticVcf, purpleSomaticVcfIndex, purpleSvVcf, purpleSvVcfIndex,
purpleVersion, purpleGermlineVcf, purpleGermlineVcfIndex, driverCatalogGermlineTsv]
Array[File] plots = [circosPlot, copynumberPlot, inputPlot, mapPlot, purityRangePlot,
- segmentPlot, somaticClonalityPlot, somaticPlot, somaticRainfallPlot]
+ segmentPlot, somaticClonalityPlot, somaticPlot]
Array[File] circos = [circosNormalRatio, circosConf, circosIndel, circosLink,
circosTumorRatio, circosGaps, circosBaf, circosCnv, circosInputConf, circosMap,
circosSnp]
--
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