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Commit 7957c85f authored by Cats's avatar Cats
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add bam index to ApplyBQSR input

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...@@ -3,6 +3,7 @@ task ApplyBQSR { ...@@ -3,6 +3,7 @@ task ApplyBQSR {
String? preCommand String? preCommand
File gatkJar File gatkJar
File inputBam File inputBam
File inputBamIndex
String outputBamPath String outputBamPath
File recalibrationReport File recalibrationReport
Array[File]+ sequenceGroupInterval Array[File]+ sequenceGroupInterval
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