add bam index to ApplyBQSR input

7957c85f · Cats · e2c52a71 · 7957c85f
Commit 7957c85f authored 6 years ago by Cats
--- a/gatk.wdl
+++ b/gatk.wdl
@@ -3,6 +3,7 @@ task ApplyBQSR {
    String? preCommand
    File gatkJar
    File inputBam
+    File inputBamIndex
    String outputBamPath
    File recalibrationReport
    Array[File]+ sequenceGroupInterval