unsmoothedModeledSegments: {description: "The initial modeled-segments result before segmentation smoothing."}
unsmoothedCopyRatioParameters: {description: "The initial copy-ratio-model global-parameter result before segmentation smoothing"}
unsmoothedCopyRatioParameters: {description: "The initial copy-ratio-model global-parameter result before segmentation smoothing."}
unsmoothedAlleleFractionParameters: {description: "The initial allele-fraction-model global-parameter result before segmentation smoothing."}
modeledSegments: {description: "The final modeled-segments result after segmentation smoothing."}
copyRatioParameters: {description: "The final copy-ratio-model global-parameter result after segmentation smoothing"}
copyRatioParameters: {description: "The final copy-ratio-model global-parameter result after segmentation smoothing."}
alleleFractionParameters: {description: "The final allele-fraction-model global-parameter result after segmentation smoothing."}
normalHetrozygousAllelicCounts: {description: "Allelic-counts file containing the counts at sites genotyped as heterozygous in the matched-normal sample."}
}
...
...
@@ -1766,7 +1766,7 @@ task VariantFiltration {
dockerImage: {description: "The docker image used for this task. Changing this may result in errors which the developers may choose not to address.", category: "advanced"}
# outputs
filteredVcf: {description: "A filtered VCF in which passing variants are annotated as PASS and failing variants are annotated with the name(s) of the filter(s) they failed."}
filteredVcf: {description: "A filtered VCF in which passing variants are annotated as PASS and failing variants are annotated with the name(s) of the filter(s) they failed."}
filteredVcfIndex: {description: "Index of filtered VCF."}