From 5ddecde657b2802aab5a15e99de0a295f615e1bd Mon Sep 17 00:00:00 2001
From: Ruben Vorderman <r.h.p.vorderman@lumc.nl>
Date: Thu, 14 Jun 2018 15:05:18 +0200
Subject: [PATCH] set minimumlength to 1 by default
---
cutadapt.wdl | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/cutadapt.wdl b/cutadapt.wdl
index 6e6cd56..d4255c6 100644
--- a/cutadapt.wdl
+++ b/cutadapt.wdl
@@ -33,7 +33,7 @@ task cutadapt {
String? stripSuffix
String? prefix
String? suffix
- Int? minimumLength
+ Int? minimumLength = 1 # Necessary to prevent creation of empty reads
Int? maximumLength
Int? maxN
Boolean? discardTrimmed
--
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