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Commit 54ac9d0c authored by Cats's avatar Cats
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add missed argument in purple

parent 857da21e
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......@@ -283,6 +283,7 @@ task Purple {
File referenceFasta
File referenceFastaFai
File referenceFastaDict
File driverGenePanel
File hotspots
Int threads = 1
......@@ -306,6 +307,7 @@ task Purple {
-circos /usr/local/bin/circos \
-ref_genome ~{referenceFasta} \
-driver_catalog \
-driver_gene_panel ~{driverGenePanel} \
-hotspots ~{hotspots} \
-threads ~{threads}
......@@ -340,6 +342,7 @@ task Purple {
referenceFastaDict: {description: "The sequence dictionary associated with the reference fasta file.",
category: "required"}
referenceFastaFai: {description: "The index for the reference fasta file.", category: "required"}
driverGenePanel: {description: "A bed file describing the driver gene panel.", category: "required"}
hotspots: {description: "A vcf file with hotspot variant sites.", category: "required"}
threads: {description: "The number of threads the program will use.", category: "advanced"}
......
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