diff --git a/hmftools.wdl b/hmftools.wdl index ed2914bf18b6ee88113d885759a0704e0d7bf059..fc56ecd915f6c26c9fceeaa6806f5661b7a5e4df 100644 --- a/hmftools.wdl +++ b/hmftools.wdl @@ -283,6 +283,7 @@ task Purple { File referenceFasta File referenceFastaFai File referenceFastaDict + File driverGenePanel File hotspots Int threads = 1 @@ -306,6 +307,7 @@ task Purple { -circos /usr/local/bin/circos \ -ref_genome ~{referenceFasta} \ -driver_catalog \ + -driver_gene_panel ~{driverGenePanel} \ -hotspots ~{hotspots} \ -threads ~{threads} @@ -340,6 +342,7 @@ task Purple { referenceFastaDict: {description: "The sequence dictionary associated with the reference fasta file.", category: "required"} referenceFastaFai: {description: "The index for the reference fasta file.", category: "required"} + driverGenePanel: {description: "A bed file describing the driver gene panel.", category: "required"} hotspots: {description: "A vcf file with hotspot variant sites.", category: "required"} threads: {description: "The number of threads the program will use.", category: "advanced"}