From 48ac569f6277ea927bf2c8c091e8b5dac5180c8d Mon Sep 17 00:00:00 2001
From: JasperBoom <jboom@infernum.nl>
Date: Mon, 3 Feb 2020 09:32:58 +0100
Subject: [PATCH] Update Krona container.
---
centrifuge.wdl | 10 +++++-----
1 file changed, 5 insertions(+), 5 deletions(-)
diff --git a/centrifuge.wdl b/centrifuge.wdl
index e2c43c8..a3e7aea 100644
--- a/centrifuge.wdl
+++ b/centrifuge.wdl
@@ -37,7 +37,7 @@ task Build {
Int threads = 5
String memory = "20G"
- String dockerImage = "quay.io/biocontainers/centrifuge:1.0.4_beta--he860b03_3"
+ String dockerImage = "quay.io/biocontainers/centrifuge:1.0.4_beta--he513fc3_5"
}
command {
@@ -107,7 +107,7 @@ task Classify {
Int threads = 4
String memory = "16G"
- String dockerImage = "quay.io/biocontainers/centrifuge:1.0.4_beta--he860b03_3"
+ String dockerImage = "quay.io/biocontainers/centrifuge:1.0.4_beta--he513fc3_5"
}
Map[String, String] inputFormatOptions = {"fastq": "-q", "fasta": "-f", "qseq": "--qseq", "raw": "-r", "sequences": "-c"}
@@ -184,7 +184,7 @@ task Inspect {
Int? across
String memory = "4G"
- String dockerImage = "quay.io/biocontainers/centrifuge:1.0.4_beta--he860b03_3"
+ String dockerImage = "quay.io/biocontainers/centrifuge:1.0.4_beta--he513fc3_5"
}
Map[String, String] outputOptions = {"fasta": "", "names": "--names", "summary": "--summary", "conversionTable": "--conversion-table", "taxonomyTree": "--taxonomy-tree", "nameTable": "--name-table", "sizeTable": "--size-table"}
@@ -307,7 +307,7 @@ task Kreport {
Int? minimumLength
String memory = "4G"
- String dockerImage = "quay.io/biocontainers/centrifuge:1.0.4_beta--he860b03_3"
+ String dockerImage = "quay.io/biocontainers/centrifuge:1.0.4_beta--he513fc3_5"
}
command <<<
@@ -362,7 +362,7 @@ task KTimportTaxonomy {
String outputPrefix
String memory = "4G"
- String dockerImage = "quay.io/biocontainers/krona:2.7.1--pl526_1"
+ String dockerImage = "biocontainers/krona:v2.7.1_cv1"
}
command {
--
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