Skip to content
Snippets Groups Projects
Unverified Commit 439915b2 authored by Cats's avatar Cats Committed by GitHub
Browse files

Update stringtie.wdl

parent 5e78f75b
No related branches found
No related tags found
1 merge request!79Update stringtie.wdl
Hide whitespace changes
Inline Side-by-side
Showing
with 2 additions and 2 deletions
stringtie.wdl
+ 2
− 2
View file @ 439915b2
...@@ -22,7 +22,7 @@ task Stringtie { ...@@ -22,7 +22,7 @@ task Stringtie {
~{"-p " + threads} \ ~{"-p " + threads} \
~{"-G " + referenceGtf} \ ~{"-G " + referenceGtf} \
~{true="--rf" false="" firstStranded} \ ~{true="--rf" false="" firstStranded} \
~{true="fr" false="" secondStranded} \ ~{true="--fr" false="" secondStranded} \
-o ~{assembledTranscriptsFile} \ -o ~{assembledTranscriptsFile} \
~{"-A " + geneAbundanceFile} \ ~{"-A " + geneAbundanceFile} \
~{bamFile.file} ~{bamFile.file}
...@@ -36,4 +36,4 @@ task Stringtie { ...@@ -36,4 +36,4 @@ task Stringtie {
runtime { runtime {
cpu: threads cpu: threads
} }
} }
\ No newline at end of file
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment