From 439915b2605bc2a30cdc97e1bc54903615257219 Mon Sep 17 00:00:00 2001
From: DavyCats <davycats.dc@gmail.com>
Date: Tue, 4 Dec 2018 09:46:45 +0100
Subject: [PATCH] Update stringtie.wdl
---
stringtie.wdl | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/stringtie.wdl b/stringtie.wdl
index b26109d..772492c 100644
--- a/stringtie.wdl
+++ b/stringtie.wdl
@@ -22,7 +22,7 @@ task Stringtie {
~{"-p " + threads} \
~{"-G " + referenceGtf} \
~{true="--rf" false="" firstStranded} \
- ~{true="fr" false="" secondStranded} \
+ ~{true="--fr" false="" secondStranded} \
-o ~{assembledTranscriptsFile} \
~{"-A " + geneAbundanceFile} \
~{bamFile.file}
@@ -36,4 +36,4 @@ task Stringtie {
runtime {
cpu: threads
}
-}
\ No newline at end of file
+}
--
GitLab