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Commit 3babebed authored by Ruben Vorderman's avatar Ruben Vorderman
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require memory and threads

parent 6c4ba5f0
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2 merge requests!9Changes for virus assembly pipeline,!10Extra tasks required for assembly.
......@@ -22,8 +22,8 @@ task spades {
Boolean? disableGzipOutput
Boolean? disableRepeatResolution
File? dataset
Int? threads = 1
Int? memoryGb = 4
Int threads
Int memoryGb
File? tmpDir
String? k
Float? covCutoff
......@@ -73,7 +73,7 @@ task spades {
File log = outputDir + "/spades.log"
}
runtime {
cpu: select_first([threads])
memory: select_first([memoryGb])
cpu: threads
memory: memoryGb
}
}
\ No newline at end of file
......@@ -4,13 +4,13 @@ task unicycler {
File short2
File? unpaired
File? long
String out
String out,
Int? verbosity
Int? minFastaLength
Int? keep
Boolean? vcf
Int? threads = 1
Int? memory = 4
Int threads
Int memory
String? mode
Float? minBridgeQual
Int? linearSeqs
......@@ -90,7 +90,7 @@ task unicycler {
}
runtime {
cpu: select_first([threads])
memory: select_first([memory])
cpu: threads
memory: memory
}
}
\ No newline at end of file
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