diff --git a/spades.wdl b/spades.wdl index 408ea087f2899dc5b488b0fca4d05ef4cac8b0d9..49c095c8e7ef165a4e1e2b191f61f984f980f6ca 100644 --- a/spades.wdl +++ b/spades.wdl @@ -22,8 +22,8 @@ task spades { Boolean? disableGzipOutput Boolean? disableRepeatResolution File? dataset - Int? threads = 1 - Int? memoryGb = 4 + Int threads + Int memoryGb File? tmpDir String? k Float? covCutoff @@ -73,7 +73,7 @@ task spades { File log = outputDir + "/spades.log" } runtime { - cpu: select_first([threads]) - memory: select_first([memoryGb]) + cpu: threads + memory: memoryGb } } \ No newline at end of file diff --git a/unicycler.wdl b/unicycler.wdl index e9da2972204810d01a90cecd747aeb49f78e5f3b..ff3d2b5d0c9314849215aadc41fd489c74927067 100644 --- a/unicycler.wdl +++ b/unicycler.wdl @@ -4,13 +4,13 @@ task unicycler { File short2 File? unpaired File? long - String out + String out, Int? verbosity Int? minFastaLength Int? keep Boolean? vcf - Int? threads = 1 - Int? memory = 4 + Int threads + Int memory String? mode Float? minBridgeQual Int? linearSeqs @@ -90,7 +90,7 @@ task unicycler { } runtime { - cpu: select_first([threads]) - memory: select_first([memory]) + cpu: threads + memory: memory } } \ No newline at end of file