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Commit 2acfd5aa authored by António Paulo's avatar António Paulo
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add panel of normals option to mutect2

parent 2d5d02f2
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......@@ -258,6 +258,7 @@ task MuTect2 {
String outputVcf
String tumorSample
String? normalSample
File? panelOfNormals
Array[File]+ intervals
Int memory = 4
......@@ -274,6 +275,7 @@ task MuTect2 {
-I ~{sep=" -I " inputBams} \
-tumor ~{tumorSample} \
~{"-normal " + normalSample} \
~{"--panel-of-normals " + panelOfNormals} \
-O ~{outputVcf} \
-L ~{sep=" -L " intervals}
}
......
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