diff --git a/gatk.wdl b/gatk.wdl index e76a93e8c979c6ebee0e8857d669da2e13827458..50a26f0414dadb325ecda2e43cebbdc26922fe26 100644 --- a/gatk.wdl +++ b/gatk.wdl @@ -258,6 +258,7 @@ task MuTect2 { String outputVcf String tumorSample String? normalSample + File? panelOfNormals Array[File]+ intervals Int memory = 4 @@ -274,6 +275,7 @@ task MuTect2 { -I ~{sep=" -I " inputBams} \ -tumor ~{tumorSample} \ ~{"-normal " + normalSample} \ + ~{"--panel-of-normals " + panelOfNormals} \ -O ~{outputVcf} \ -L ~{sep=" -L " intervals} }