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Commit 00eb908d authored by Ruben Vorderman's avatar Ruben Vorderman
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allocate extra memory to extract adapters fastqc

parent dbf8d239
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2 merge requests!9Changes for virus assembly pipeline,!10Extra tasks required for assembly.
......@@ -95,6 +95,9 @@ task extractAdapters {
Array[String] adapterList = read_lines(select_first([adapterOutputFilePath]))
Array[String] contamsList = read_lines(select_first([contamsOutputFilePath]))
}
runtime {
memory: "8G"
}
}
task getConfiguration {
......@@ -111,4 +114,4 @@ task getConfiguration {
File contaminantList = fastqcDir + "/Configuration/contaminant_list.txt"
File limits = fastqcDir + "/Configuration/limits.txt"
}
}
\ No newline at end of file
}
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