From 00eb908d58407bb6c38c152b164eff0b0cfd6ad8 Mon Sep 17 00:00:00 2001
From: rhpvorderman <r.h.p.vorderman@lumc.nl>
Date: Thu, 22 Feb 2018 11:54:59 +0100
Subject: [PATCH] allocate extra memory to extract adapters fastqc
---
fastqc.wdl | 5 ++++-
1 file changed, 4 insertions(+), 1 deletion(-)
diff --git a/fastqc.wdl b/fastqc.wdl
index aa1e397..dc0d71d 100644
--- a/fastqc.wdl
+++ b/fastqc.wdl
@@ -95,6 +95,9 @@ task extractAdapters {
Array[String] adapterList = read_lines(select_first([adapterOutputFilePath]))
Array[String] contamsList = read_lines(select_first([contamsOutputFilePath]))
}
+ runtime {
+ memory: "8G"
+ }
}
task getConfiguration {
@@ -111,4 +114,4 @@ task getConfiguration {
File contaminantList = fastqcDir + "/Configuration/contaminant_list.txt"
File limits = fastqcDir + "/Configuration/limits.txt"
}
-}
\ No newline at end of file
+}
--
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