import script does not import profile counts (and percentages)
The script bin/import_jovian_output.py
does not import the result files results/profile_read_counts.csv
and results/profile_percentages.csv
(from quantify_output
). These numbers can still be useful when quantifying/normalising numbers in metagenomes. For instance, if I want to quantify the number of reads mapped to E. coli scaffolds per 1M reads mapped, it is nice if I have this number of total mapped reads (= reads left after trimming and human genome filtering) available and do not have to count file lengths again.