02 Jan |
T-00-006 |
no |
meeting |
|
|
09 Jan |
T-00-006 |
Sander B. |
BWA versus minimap2 |
Yahya |
2018 Evaluation |
16 Jan |
T-00-006 |
Bpexa Students |
Bpexa Students |
Ioannis Moustakas |
attempt to remove batch effects in single cell analysis |
23 Jan |
T-00-006 |
Liana Grieken (HUID) |
10x longranger pipeline |
Igno Maggio (CCB/KJC) |
CRISPR-CAS9 introduction and study on on-target efficiency |
30 Jan |
T-00-006 |
Sander Tuit |
Identification of tumor-associated genes for targeted T-cell therapy |
Szymon M. Kiełbasa |
Single Cell Sample Matcher |
06 Feb |
P-00-112 |
Ivo Fokkema |
Population-based MAF and variant prioritization |
David |
Ruben Vorderman, simple testing of workflows |
13 Feb |
P-00-112 |
Davy Cats |
KeyGenes (classifying sample tissues from RNAseq counts) |
Dani |
|
20 Feb |
P-00-112 |
Mario Cangiano |
Network analysis of prostate cancer xenografts |
Peter Taschner |
Monitoring of training effects using gene expression profiles |
27 Feb |
P-00-112 |
Dina Ruano |
Neoantigen detection in low mutation rate tumors |
Jihed Chouaref |
Introduction |
06 Mar |
P-00-112 |
Brian Piepenbroek |
Metagenomic analysis of cutaneous T- and B-cell lymphomas using Centrifuge |
Leon/Cedrick |
SV calling, merging, with test case from Project MinE |
13 Mar |
P-00-112 |
Dani Borras |
New ATACseq results for Acla homologs |
Johan den Dunnen |
title |
20 Mar |
P-00-112 |
Ioannis Moustakas |
Batch effect correction in single cell RNAseq experiments |
Ellen Carbo |
The rediscovery of MERS and SARS |
27 Mar |
P-00-112 |
|
title |
Floyd Wittink (HL) |
Nanopore sequencing in the LCAB |
03 Apr |
P-00-112 |
BioSB 2019 Conference |
- - - - - |
- - - - - |
- - - - - |
10 Apr |
P-00-112 |
Roberta Menafra |
An update on the RNGS19 VIB conference |
David |
|
17 Apr |
P-00-112 |
Ioannis Moustakas |
Dimensionality reduction as a means of noise reduction in sc RNA-seq datasets |
Leon Mei |
Update on (1) running CRISPResso for CRISPR-CAS9 analysis and (2) HLA typing tools |
24 Apr |
P-00-112 |
Bastian Hornung |
Contamination everywhere |
Ellen Carbo |
The rediscovery of MERS and SARS |
01 May |
P-00-112 |
Stef Janson |
title |
|
|
08 May |
P-00-112 |
SMRTLeiden 2019 Conference |
- - - - - |
- - - - - |
- - - - - |
15 May |
P-00-112 |
David San Leon Granado |
FHSD and methylation |
|
|
22 May |
P-00-112 |
Julieta Sepulveda Yanez |
Germline variants in Diffuse large B-cell lymphoma (DLBCL) |
Arjen Speksnijder (Naturalis) |
Moleculair identification of plant pollen in air samples |
29 May |
P-00-112 |
Amrish Mahes |
title |
Jorrit van Uhm (Derm internship) |
Using WES data to discover CNVs, SNVs and indels in cutaneous anaplastic large cell lymphoma |
05 Jun |
P-00-112 |
Ruben Vorderman |
Singularity |
|
|
12 Jun |
P-00-112 |
Bas Verbruggen |
title |
|
|
19 Jun |
P-00-112 |
Jihed Chouaref |
Morc3 single cell ATAC-seq |
Sander Bollen |
Index hopping on the Illumina NovaSeq |
26 Jun |
P-00-112 |
Ruben |
smallRNA pipeline in biowdl |
Jan Oosting |
Pathway directed transcription analysis |
03 Jul |
P-00-112 |
Leon |
CRISPR efficiency analysis using CRISPResso & Discussion about /exports/genomes/species/H.sapiens/ on SHARK |
David San Leon |
FSHD2 classifications |
10 Jul |
P-00-112 |
Ioannis |
methylation analysis |
Sander Bollen |
Fast fastq archiving with fastqube |
17 Jul |
P-00-112 |
|
|
|
|
24 Jul |
P-00-112 |
|
|
|
|
31 Jul |
P-00-112 |
|
|
|
|
07 Aug |
P-00-112 |
|
|
|
|
14 Aug |
P-00-112 |
|
|
|
|
21 Aug |
P-00-112 |
|
|
|
|
28 Aug |
P-00-112 |
|
|
|
|
04 Sep |
P-00-112 |
Jasper Boom |
Long read pipeline Talon |
Leon Mei |
SASC update and future plans |
11 Sep |
P-00-112 |
Tom Metz (HG) |
scRNA experiment and data analysis update |
Ruben Vorderman |
use of xWiki |
18 Sep |
P-00-112 |
|
|
|
|
25 Sep |
P-00-112 |
Mark (& Jonathan) |
Variant Frequency Database |
Davy Cats |
release of bioWDL |
02 Oct |
P-00-112 |
Dina Ruano |
Inclusion of ALT contigs in bwa alignment |
Tom Kuipers |
R-Shiny based differential gene expression analysis platform |
09 Oct |
P-00-112 |
Ioannis Moustakas |
scRNA-seq quantification with Kallisto Bustools
|
Pietro Spitali |
Multi-omics: from biomarkers to drug repurposing |
16 Oct |
P-00-112 |
Myrthe van Baardwijk (Dermatology intern) and Cedrick Agaser |
Prioritizing clinically relevant genomic variants for cutaneous melanoma out of a pile of variant calls (approaches and results) |
Rick de Leeuw (FLDO) |
Optimizing STR analysis using Massively Parallel Sequencing |
23 Oct |
P-01-020 |
Dani Borras |
More drugs, more fun |
Roberta Menafra |
SCT transformation and data integration in scRNAseq |
~~30 Oct~~ CANCELLED |
P-01-020 |
Julian van Toledo (Dermatology intern) |
|
Vered Raz |
PI talk |
06 Nov |
T-00-008 |
Julieta Sepulveda Yanez |
Germline Variants in DLBCL |
Mike Puijk (Generade intern) |
Accurately Characterizing the Microbiome in low-biomass environments |
13 Nov |
P-01-020 |
Chiel Wevers |
Implementation of an improved (diagnostic) workflow for variant analysis and interpretation in a commercial setting |
Julian van Toledo (Dermatology intern) |
The genomic and genetic identification of PCALCL |
20 Nov |
P-01-020 |
Mario Cangiano |
A transcription factors profiling method to predict tumour progression in localised prostate cancers |
Sam Nooij |
Whole-Genome Sequencing of Multi-Drug Resistant Organisms in a nursing home |
27 Nov |
P-01-020 |
Ruben Vorderman |
To understand X-inactivation with variant analysis (background and plan) |
|
|
04 Dec |
P-01-020 |
Peter Taschner |
PI talk "Check the test" |
Stef Janson |
Basics and implementation of unique molecular identifiers (UMI). |
11 Dec |
P-01-020 |
Siemen Brussee (Pathology intern) |
Automate pathogenicity (re)classification of variants found in oncological diagnostics |
Amrish Mahes |
Identification of insert sequences in CHO samples |
18 Dec |
P-01-020 |
Jan Oosting |
|
Ingrid Tomljanovic |
|