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R scripts that could be useful for analysis in RP3. For example, extracting information from the metaDb, calculating GC content and length based on the exons files, RNAseq normalization e.g. cqn, ...
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Scripts used for differential gene expression analysis and its reporting (currently for RNA-seq data)
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Allele-specific expression (a.k.a. differential allelic expression) in breast cancer
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Generate and Annotate DNAse-seq footprint with Transcription factor binding sites.
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Leiden450K contains a couple of functions for preprocessing of Illumina Human 450K array data, such as reading idat files in parallel, filtering probes and normalization.
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