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Run the Grid part of the alternative polyadenylation pipeline
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Various tools operating over VCF files. Uses cyvcf2 and cython under the hood for speed
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A pipeline to automatically screen the output by Jovian for the presence of species and sequences (genes) of interest, and quantify them.
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This pipeline takes paired-end fastq files, does a quick genome assembly on them (via Velvet + kmergenie), and predicts antibiotic resistance via abricate.
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