Explore projects
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An automated workflow for taxonomically classifying assembled scaffolds from metagenomics data.
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An automated workflow for generating metagenomic assemblies with a focus on reconstructing plasmids.
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A pipeline to automatically screen the output by Jovian for the presence of species and sequences (genes) of interest, and quantify them.
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RNA-seq pipeline for AML diagnostics. Illustration from Anatomy & Physiology, licenced under the Creative Commons Attribution 3.0 Unported
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Pipeline to pre-process vcf and gvcf files and submit them to varda.lumc.nl
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Various tools operating over VCF files. Uses cyvcf2 and cython under the hood for speed
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Data analysis tools for Next Generation Sequencing of forensic DNA markers, including tools for characterisation and filtering of PCR stutter artefacts and other systemic noise, and for automatic detection of the alleles in a sample.
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A Snakemake workflow to automatically handle metagenomics preprocessing (i.e. host removal and low-quality trimming).
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