Explore projects
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Shiny app designed by Ben Johnson and Ruben van Helden to quickly analyse calcium trace outputs. Attached manual to explain the parameters and how to analyse your traces.
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Code used to prepare disease data in survival format, calculate LRC score, data QC and preparation, and data analyses.
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Functional metagenomics analysis using the HUMAnN tool version 3
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Analyses of antimicrobial resistance genes in metagenomic data from patients with (multiple) recurrent Clostridioides difficile infections and their faecal microbiota transplantation donors - with culture data from multidrug resistant organisms
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Microbiota analyses of metagenomic samples of ulcerative colitis patients and fecal microbiota transplantation donors in the FECBUD trial
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Engraftment calculations based on One Codex species-level taxonomic classifications of shotgun metagenomic read sets of the FECBUD trial - a collaboration between the Netherlands Donor Feces Bank and Vedanta Biosciences.
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