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A Snakemake workflow to automatically handle metagenomics preprocessing (i.e. host removal and low-quality trimming).
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Pipeline to pre-process vcf and gvcf files and submit them to varda.lumc.nl
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RNA-seq pipeline for AML diagnostics. Illustration from Anatomy & Physiology, licenced under the Creative Commons Attribution 3.0 Unported
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This was the temporary repository in which the published version of PAROS was created and this repository was temporarily made visible during the peer review process.
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Automated and parallelised workflow to assemble PacBio HiFi reads of bacteria whole-genome sequencing. Also subsamples reads before assembly and re-orients resulting contigs to the 'correct' starting position.
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A collection of semi-reusable scripts, which are not part of any official toolchain
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