Containers

added RunRegistrationInterface

ComponentSelector

The ItkSmoothingRecursiveGaussianImageFilterComponent is templated over
the dimensionality and pixeltype of in- and output. Stings "Dimensionality" and
"PixelType" are added as Criteria to select the right Component.

ENH: Add transformix tests for ComputeSpatialJacobian, ComputeDeterminantOfSpatialJacobian, ComputeDeformationField and TransformPointSet

- Automatically write pixel type and dimension to parameter file from
image type at runtime
- Default parameter maps
- Lots of fixes

Blueprint::ParameterMapType

Unit tests failed because Ctest resets the testing environment whereas this is not the case when running elxCompomentFactory executable (or in Debug mode)

and cxx files

Previously, separate containers was used for fixed and moving images.
The ITK pipeline would be driven only by the first fixed and first moving images.
This commit introduces extra bookeeping so that all images can be added to the
ITK input container and split into seperate containers for elastix at a later
stage. This is necessary because only ITK input container is part of the
pipeline mechanism.

Another (and possibly simpler) solution would be override the Update() function
and check that all image containers are up to date. However, this places the
responsilibity of pipeline mechanism maintenance on us. It is probably better
to keep this upstream.

TODO: Test fails because of problems with setting up multiple instances
of xout in the same process

Also introduces the “SUPERELATIX_RUN_LONG_TESTS” option that disables
long running tests by default (e.g. 3D and 4D registration tests)

Interface related criteria can be handled in the MeetsCriteria in the
BaseComponent as well as the iterator over criteria, other (developer-user) specific Criteria are deligated to
MeetsCriterum per iteration.

Interface related criteria can be handled in the MeetsCriteria in the
BaseComponent as well as the iterator over criteria, other (developer-user) specific Criteria are deligated to
MeetsCriterum per iteration.

TFixedImage as the ImageSource template since the output image is
always resampled to the fixed image domain.

TODO: Fix 'error while setting up xout' error when running multiple
ElastixFilters in the same binary (see ELASTIX-56 in SuperElastix Jira)