Commits · 8300b90f3ee88e92e4d43263e6826a58453dff7d · Mirrors / mutalyzer

Jul 12, 2012

Support non-coding transcripts in position converter (#102) · 8300b90f

Vermaat authored 12 years ago

git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/trunk@573 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1

8300b90f

Support compound variants in position converter · 0875bfe0

Vermaat authored 12 years ago

git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/trunk@572 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1

0875bfe0

Add mappingInfo to SOAP tools · 6ac7b1b2

Vermaat authored 12 years ago

git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/trunk@571 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1

6ac7b1b2

Jul 11, 2012

Fix position converter for delins with explicit sequences · 5366cb35

Vermaat authored 12 years ago

git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/trunk@570 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1

5366cb35

Typo. · 4e48f80f

Laros authored 12 years ago

git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/trunk@569 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1

4e48f80f

Fix r563 to use * instead of counting · 5ac088a0

Vermaat authored 12 years ago

git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/trunk@568 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1

5ac088a0

Update unit tests for r563 · 6445361f

Vermaat authored 12 years ago

git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/trunk@567 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1

6445361f

Open development for 2.0.beta-21 · 4c2af46a

Vermaat authored 12 years ago

git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/trunk@566 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1

4c2af46a

Release 2.0.beta-20 · 4e915a2c

Vermaat authored 12 years ago

git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/trunk@564 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1

4e915a2c

Jul 10, 2012

Disabled the -u and +d convention in favour of the official HGVS · 8927d789

Laros authored 12 years ago

recommendations.



git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/trunk@563 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1

8927d789

Fix rpclib installation · 68471fbf

Vermaat authored 12 years ago

git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/trunk@562 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1

68471fbf

Jun 21, 2012

Open development for 2.0.beta-20 · 663de152

Vermaat authored 12 years ago

git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/trunk@561 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1

663de152

Release 2.0.beta-19 · 05a9bc1e

Vermaat authored 12 years ago

git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/trunk@559 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1

05a9bc1e

Disable old mapping info in unit tests · e7af8a68

Vermaat authored 12 years ago

git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/trunk@558 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1

e7af8a68

Do not crash on inversions (introduced in r528) (fixes #99) · acfb2415

Vermaat authored 12 years ago

git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/trunk@557 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1

acfb2415

First download reference in GI unit tests · 061f3d34

Vermaat authored 12 years ago

git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/trunk@556 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1

061f3d34

Explicitely use MyISAM for now · 132e5b1c

Vermaat authored 12 years ago

git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/trunk@555 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1

132e5b1c

Check for unknown GI reference identifier · 885be18f

Vermaat authored 12 years ago

git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/trunk@554 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1

885be18f

Jun 07, 2012

Use known-working version of rpclib in pre-install script · d07ecaad

Vermaat authored 12 years ago

git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/trunk@552 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1

d07ecaad

Open development for 2.0.beta-19 · 19bc71c9

Vermaat authored 12 years ago

git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/trunk@551 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1

19bc71c9

Release 2.0.beta-18 · 5a4d7d4f

Vermaat authored 12 years ago

git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/trunk@549 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1

5a4d7d4f

Unit test for non-interactive links · 6a90c42e

Vermaat authored 12 years ago

git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/trunk@548 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1

6a90c42e

May 31, 2012

Clarify batch checker help text (fixes #44) · 18aaf273

Vermaat authored 12 years ago

git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/trunk@546 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1

18aaf273

Reintegrate rpclib-branch (implements Trac #66) · e1a36e3c

Vermaat authored 12 years ago

git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/trunk@545 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1

e1a36e3c

May 30, 2012

Documentation on HTTP/RPC+JSON webservice · 450ed861

Vermaat authored 12 years ago

git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/branches/rpclib-branch@544 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1

450ed861

Improve logging for getTranscriptsAndInfo · eb448cbe

Vermaat authored 12 years ago

git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/branches/rpclib-branch@543 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1

eb448cbe

May 29, 2012

Merge r540 from trunk · 433ad504

Vermaat authored 12 years ago

git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/branches/rpclib-branch@542 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1

433ad504

Add HTTP/RPC+JSON unit tests · 0ae9dde3

Vermaat authored 12 years ago

git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/branches/rpclib-branch@541 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1

0ae9dde3

Note on batch output format opening · 4c81d3d9

Vermaat authored 12 years ago

git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/trunk@540 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1

4c81d3d9

Install and upgrade scripts for soaplib->rpclib · ccdb9027

Vermaat authored 12 years ago

git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/branches/rpclib-branch@539 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1

ccdb9027

May 24, 2012

Add HTTP/RPC+JSON webservice · fafb2be9

Vermaat authored 12 years ago

git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/branches/rpclib-branch@538 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1

fafb2be9

Refactor webservice organisation · 254be004

Vermaat authored 12 years ago

git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/branches/rpclib-branch@537 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1

254be004

Fix NG reference unit test · 7c44041d

Vermaat authored 12 years ago

git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/branches/rpclib-branch@536 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1

7c44041d

Add suds.client to logging blacklist · fe41b0a2

Vermaat authored 12 years ago

git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/branches/rpclib-branch@535 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1

fe41b0a2

May 23, 2012

Port from soaplib to current rpclib · 1a09c506

Vermaat authored 12 years ago

git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/branches/rpclib-branch@534 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1

1a09c506

Create rpclib-branch from trunk · a168d35b

Vermaat authored 12 years ago

git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/branches/rpclib-branch@533 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1

a168d35b

May 21, 2012

Auto reconnect to MySQL server (not using MySQLdb) · a332e33a

Vermaat authored 12 years ago

Automatically reconnect to the MySQL server if the connection has been lost,
independent from MySQLdb reconnect option which may not always be available.
This fixes Trac ticket #91.

git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/trunk@529 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1

a332e33a

Refactor mutator module (fixes Trac #83) · c8d273cc

Vermaat authored 12 years ago

git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/trunk@528 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1

c8d273cc

May 14, 2012

Compound variant unit tests for mutator module · 4cc55c61

Vermaat authored 12 years ago

git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/trunk@527 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1

4cc55c61

May 11, 2012

Specify chromosome by name in reference file loader (#92) · f67eec97

Vermaat authored 12 years ago

git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/trunk@526 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1

f67eec97