Commits · 5f77ecaf5db56f479b2e222554439b52bcbec071 · Mirrors / mutalyzer

Jan 25, 2012
- Fix LRG reference sequences · 5f77ecaf
  Vermaat authored 13 years ago
  5f77ecaf
Dec 14, 2011
- Do not crash on EX positioning (fixes #79) · 2809d839
  Vermaat authored 13 years ago
  2809d839
Nov 24, 2011
- Add strandedness to BED tracks · 325130bb
  Vermaat authored 13 years ago
  325130bb
Nov 14, 2011
- Fix crash on variant without reference (thx Ivar) · 5fdc74c3
  Vermaat authored 13 years ago
  5fdc74c3
Nov 08, 2011
- Retrieve full sequence for contig reference files · cff8ea36
  Vermaat authored 13 years ago
  cff8ea36
Nov 04, 2011
- Use implicit configuration object creation · ae2ae0c8
  Vermaat authored 13 years ago
  ae2ae0c8
Oct 20, 2011
- Implement BED tracks for Genome Browser · 8402dae3
  Vermaat authored 13 years ago
  8402dae3
Aug 24, 2011
- Get only primary assembly mappings in position converter (naive fix for #58). · 11eb9eec
  Vermaat authored 13 years ago
  11eb9eec
Aug 18, 2011
- Fix a bug in commit r324, allowing ordinary delins again. · 7bc44ba1
  Vermaat authored 13 years ago
  7bc44ba1
- Fix splicing bug, affecting variant protein descriptions. · fb2e95c4
  Vermaat authored 13 years ago
  fb2e95c4
- Preliminary implementation of issue #38 (unknown exon offsets). · abe2a056
  Vermaat authored 13 years ago
  abe2a056
Aug 16, 2011
- Fix: don't remove flanking splice sites on deletion of exons on a transcript · a6434a92
  Vermaat authored 13 years ago
  a6434a92
Apr 21, 2011
- Fixes for roll on reverse strand. · 8c350459
  Vermaat authored 14 years ago
  8c350459
Apr 11, 2011
- Fixes for whole-exon deletions. · 38e90d0b
  Vermaat authored 14 years ago
  38e90d0b
Apr 07, 2011
- Use environment variable MUTALYZER_ENV=test to use testing settings. · d2c3743f
  Vermaat authored 14 years ago
  d2c3743f
- Completed post-install script. Related fixes. · 9289bd3f
  Vermaat authored 14 years ago
  9289bd3f
Apr 05, 2011
- Sort of working version with setuptools. · b70090c6
  Vermaat authored 14 years ago
  b70090c6
Apr 04, 2011
- - Moved tests from ./mutalyzer/tests/ to ./tests/. · e2b51a1f
  Vermaat authored 14 years ago
  e2b51a1f
Mar 31, 2011
- Deletions of entire exons (even number of consecutive splice sites). · e13db7df
  Vermaat authored 14 years ago
  e13db7df
- Some updates to the batch job runner. It is now an executable in bin/. · 4b9d36e6
  Vermaat authored 14 years ago
  4b9d36e6
Mar 29, 2011
- Unit tests should not be executable. · a1c2b8eb
  Vermaat authored 14 years ago
  a1c2b8eb
- Updated unit tests. Now using the nose Python testing framework. · 3f15b518
  Vermaat authored 14 years ago
  3f15b518
Mar 28, 2011
- Refactoring configuration and file paths. · 6150d6dd
  Vermaat authored 14 years ago
  6150d6dd
Mar 25, 2011
- Fixed bug in snp converter. Updated unit tests. · af0ca006
  Vermaat authored 14 years ago
  af0ca006
Mar 23, 2011
- Working now in mutalyzer package dir. · 52e8ab23
  Vermaat authored 14 years ago
  52e8ab23
- Renamed src/ to mutalyzer/. · a1599de2
  Vermaat authored 14 years ago
  a1599de2
Mar 14, 2011
- Revert commit r195. · 5c9d4bef
  Vermaat authored 14 years ago
  5c9d4bef
Mar 08, 2011
- Try to handle whole-exon deletion and exon-fusion. · e301a743
  Vermaat authored 14 years ago
  e301a743
Feb 28, 2011
- Added info messages for corrected roll rule on splice sites. · 6da9de0a
  Vermaat authored 14 years ago
  6da9de0a
Feb 25, 2011
- Correctly roll from first exon position (issue #40). · 09ff8295
  Vermaat authored 14 years ago
  09ff8295
- Don't include insertion directly outside CDS in CDS. · bb161160
  Vermaat authored 14 years ago
  bb161160