Commits · 5952b8a0d008ad85e736d6e89c7b31e4a9830922 · Mirrors / mutalyzer

Jul 26, 2012
- Removed erroneous optional argument check for DelIns. (Fixes #108). · 5952b8a0
  Laros authored 12 years ago
  
  git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/trunk@589 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1
  5952b8a0
Jul 25, 2012

Allow leading whitespace in batch input (#107) · 6030c8b7

Vermaat authored 12 years ago

git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/trunk@588 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1

6030c8b7

Merge spyne branch back in trunk · 76e90a4c

Vermaat authored 12 years ago

git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/trunk@586 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1

76e90a4c

Jul 23, 2012

Open development for 2.0.beta-22 · 2b47e863

Vermaat authored 12 years ago

git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/branches/spyne@585 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1

2b47e863

Release 2.0.beta-21 · 6cf159f5

Vermaat authored 12 years ago

git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/branches/spyne@583 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1

6cf159f5

Use spyne instead of rpclib in install script · b5ae751b

Vermaat authored 12 years ago

git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/branches/spyne@582 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1

b5ae751b

Only apply spyne monkey patch if needed · 7b48d010

Vermaat authored 12 years ago

git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/branches/spyne@581 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1

7b48d010

Jul 16, 2012

Better Json-serialized Fault objects · bdf95fab

Vermaat authored 12 years ago

git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/branches/spyne@580 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1

bdf95fab

Monkey patch spyne to Json-serialize Fault objects · 68ffe865

Vermaat authored 12 years ago

git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/branches/spyne@579 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1

68ffe865

Update tests for wrapped json responses · 7f986b76

Vermaat authored 12 years ago

git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/branches/spyne@578 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1

7f986b76

Fix for primitive JSON result datatypes · e985d0b4

Vermaat authored 12 years ago

git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/branches/spyne@577 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1

e985d0b4

Move from rpclib to spyne · f942943b

Vermaat authored 12 years ago

git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/branches/spyne@576 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1

f942943b

Create spyne branch from trunk · a361697e

Vermaat authored 12 years ago

git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/branches/spyne@575 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1

a361697e

Add chromAccession.py to SOAP tools · 80db7b5b

Vermaat authored 12 years ago

git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/trunk@574 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1

80db7b5b

Jul 12, 2012

Support non-coding transcripts in position converter (#102) · 8300b90f

Vermaat authored 12 years ago

git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/trunk@573 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1

8300b90f

Support compound variants in position converter · 0875bfe0

Vermaat authored 12 years ago

git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/trunk@572 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1

0875bfe0

Add mappingInfo to SOAP tools · 6ac7b1b2

Vermaat authored 12 years ago

git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/trunk@571 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1

6ac7b1b2

Jul 11, 2012

Fix position converter for delins with explicit sequences · 5366cb35

Vermaat authored 12 years ago

git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/trunk@570 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1

5366cb35

Typo. · 4e48f80f

Laros authored 12 years ago

git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/trunk@569 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1

4e48f80f

Fix r563 to use * instead of counting · 5ac088a0

Vermaat authored 12 years ago

git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/trunk@568 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1

5ac088a0

Update unit tests for r563 · 6445361f

Vermaat authored 12 years ago

git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/trunk@567 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1

6445361f

Open development for 2.0.beta-21 · 4c2af46a

Vermaat authored 12 years ago

git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/trunk@566 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1

4c2af46a

Release 2.0.beta-20 · 4e915a2c

Vermaat authored 12 years ago

git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/trunk@564 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1

4e915a2c

Jul 10, 2012

Disabled the -u and +d convention in favour of the official HGVS · 8927d789

Laros authored 12 years ago

recommendations.



git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/trunk@563 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1

8927d789

Fix rpclib installation · 68471fbf

Vermaat authored 12 years ago

git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/trunk@562 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1

68471fbf

Jun 21, 2012

Open development for 2.0.beta-20 · 663de152

Vermaat authored 12 years ago

git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/trunk@561 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1

663de152

Release 2.0.beta-19 · 05a9bc1e

Vermaat authored 12 years ago

git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/trunk@559 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1

05a9bc1e

Disable old mapping info in unit tests · e7af8a68

Vermaat authored 12 years ago

git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/trunk@558 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1

e7af8a68

Do not crash on inversions (introduced in r528) (fixes #99) · acfb2415

Vermaat authored 12 years ago

git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/trunk@557 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1

acfb2415

First download reference in GI unit tests · 061f3d34

Vermaat authored 12 years ago

git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/trunk@556 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1

061f3d34

Explicitely use MyISAM for now · 132e5b1c

Vermaat authored 12 years ago

git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/trunk@555 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1

132e5b1c

Check for unknown GI reference identifier · 885be18f

Vermaat authored 12 years ago

git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/trunk@554 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1

885be18f

Jun 07, 2012

Use known-working version of rpclib in pre-install script · d07ecaad

Vermaat authored 12 years ago

git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/trunk@552 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1

d07ecaad

Open development for 2.0.beta-19 · 19bc71c9

Vermaat authored 12 years ago

git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/trunk@551 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1

19bc71c9

Release 2.0.beta-18 · 5a4d7d4f

Vermaat authored 12 years ago

git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/trunk@549 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1

5a4d7d4f

Unit test for non-interactive links · 6a90c42e

Vermaat authored 12 years ago

git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/trunk@548 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1

6a90c42e

May 31, 2012

Clarify batch checker help text (fixes #44) · 18aaf273

Vermaat authored 12 years ago

git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/trunk@546 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1

18aaf273

Reintegrate rpclib-branch (implements Trac #66) · e1a36e3c

Vermaat authored 12 years ago

git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/trunk@545 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1

e1a36e3c

May 30, 2012

Documentation on HTTP/RPC+JSON webservice · 450ed861

Vermaat authored 12 years ago

git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/branches/rpclib-branch@544 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1

450ed861

Improve logging for getTranscriptsAndInfo · eb448cbe

Vermaat authored 12 years ago

git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/branches/rpclib-branch@543 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1

eb448cbe