Commit of new tests before changing retriever behaviour

git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/branches/lrg@50 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1

src/Modules/tests/lrgtest.py

@@ -16,6 +16,9 @@ class TestRecordFromLRG(TestRecord):
         #self.record = LRGparser.createLrgRecord_new(data)
         self.record = LRGparser.createLrgRecord(data)
 
+    def test_moltype(self): #overwrite parent
+        self.assertEqual(self.record.molType, 'g')
+
     def test_mapping(self):
         mapp = self.record.mapping
         loc = mapp["chr_location"]

src/Modules/tests/recordtest.py

@@ -3,6 +3,7 @@ recordtest.py contains
     TestRecord - a BaseClass for testing GenRecord.Record instances
 """
 import unittest, types
+from Modules import GenRecord        #test class-types
 
 class TestRecord(unittest.TestCase):
 
@@ -13,19 +14,55 @@ class TestRecord(unittest.TestCase):
         raise ImportError("This method should be redefined by the Child")
 
     def test_moltype(self):
-        self.assertEqual(self.record.molType, 'g')
+        self.assertTrue(self.record.molType in ['g','c']) #Extend options
 
     def test_sequence(self):
         self._test_if_seq(self.record.seq)
 
+    def test_mapping(self):
+        pass #Overwrite in lrg_test
+
+    def test_organelle(self):
+        self.assertTrue(isinstance(self.record.organelle, (types.ListType,
+            types.NoneType)))
+
+    def test_source(self):
+        self.assertTrue(isinstance(self.record.source, GenRecord.Gene))
+
+    def test_description(self):
+        self.assertTrue(isinstance(self.record.description, types.StringType))
+
     def test_genes(self):
         self.assertTrue(len(self.record.geneList)>0)
         for gene in self.record.geneList:
-            pass
+            self.assertTrue(isinstance(gene.name, types.StringType))
+            self.assertTrue(gene.orientation in (-1, 1))
+            self._test_if_loc(gene.location)
+            self.assertTrue(isinstance(gene.longName, types.StringType))
 
 
     def test_transcripts(self):
-        pass
+        for gene in self.record.geneList:
+            self.assertTrue(len(gene.transcriptList) > 0)
+            for tc in gene.transcriptList:
+                strings = (tc.name, tc.description, tc.proteinDescription,
+                        tc.transLongName, tc.protLongName)
+                self._test_if_type(strings, types.StringType)
+                self._test_if_loc(tc.location)
+                self._test_if_type((tc.txTable,), int)
+                self.assertTrue(tc.molType in "cn")
+                plists = (tc.mRNA, tc.CDS, tc.exon)
+                for plist in plists:
+                    self.assertTrue(isinstance(plist,
+                        (types.NoneType, GenRecord.PList)))
+
+                #self.assertTrue(any(map(isinstance, 
+
+
+    def _test_if_loc(self, loc):
+        self.assertTrue(len(loc) == 2)
+        self._test_if_type(loc, (int, long))
+        self.assertTrue(loc[0] < loc[1])
 
     def _test_if_seq(self, seq):
         self.assertTrue(len(seq)>0)