SOAP tools now use SUDS monkey patch from Mutalyzer.

git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/branches/refactor-mutalyzer-branch@333 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1

extras/soap-tools/getcache.py

 #!/usr/bin/env python
 
-# Monkey patch suds, because for some weird reason the location
-# http://www.w3.org/2001/xml.xsd is used for the XML namespace, but the W3C
-# seems to respond too slow on that url. We use therefore use
-# http://www.w3.org/2009/01/xml.xsd which fixes this.
-from suds.xsd.sxbasic import Import
-_import_open = Import.open
-def _import_open_patched(self, *args, **kwargs):
-    if self.location == 'http://www.w3.org/2001/xml.xsd':
-        self.location = 'http://www.w3.org/2009/01/xml.xsd'
-    return _import_open(self, *args, **kwargs)
-Import.open = _import_open_patched
+from mutalyzer.util import monkey_patch_suds; monkey_patch_suds()
 
 import sys
 from datetime import datetime, timedelta

extras/soap-tools/getgeneandtranscript.py

 #!/usr/bin/env python
 
+from mutalyzer.util import monkey_patch_suds; monkey_patch_suds()
+
 import sys
 from suds.client import Client
 

extras/soap-tools/gettranscriptinfo.py

 #!/usr/bin/env python
 
+from mutalyzer.util import monkey_patch_suds; monkey_patch_suds()
+
 import sys
 from suds.client import Client
 

extras/soap-tools/gettranscriptsandinfo.py

 #!/usr/bin/env python
 
+from mutalyzer.util import monkey_patch_suds; monkey_patch_suds()
+
 import sys
 from suds.client import Client
 

extras/soap-tools/gettranscriptsbygenename.py

 #!/usr/bin/env python
 
+from mutalyzer.util import monkey_patch_suds; monkey_patch_suds()
+
 import sys
 from suds.client import Client
 

extras/soap-tools/info.py

@@ -10,6 +10,8 @@
 # This code is in the public domain; it can be used for whatever purpose
 # with absolutely no restrictions.
 
+from mutalyzer.util import monkey_patch_suds; monkey_patch_suds()
+
 import sys
 from suds.client import Client  # https://fedorahosted.org/suds/
 

extras/soap-tools/namecheck.py

@@ -12,6 +12,8 @@
 # This code is in the public domain; it can be used for whatever purpose
 # with absolutely no restrictions.
 
+from mutalyzer.util import monkey_patch_suds; monkey_patch_suds()
+
 import sys
 from suds.client import Client  # https://fedorahosted.org/suds/
 

extras/soap-tools/positionconvert.py

@@ -3,6 +3,8 @@
 # Usage:
 #   ./positionconvert.py hg18 'NC_000011.9:g.111959695G>T'
 
+from mutalyzer.util import monkey_patch_suds; monkey_patch_suds()
+
 import sys
 from suds.client import Client  # https://fedorahosted.org/suds/
 

extras/soap-tools/slicechromosomebygene.py

 #!/usr/bin/env python
 
+from mutalyzer.util import monkey_patch_suds; monkey_patch_suds()
+
 import sys
 from suds.client import Client
 from suds import WebFault