Position converter now tells you if no transcripts could be found in the

mutation region.



git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/trunk@185 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1

src/wsgi.py

@@ -500,7 +500,7 @@ class PositionConverter:
         if build and variant:
             converter = Mapper.Converter(build, C, O)
 
-            #Conver chr accNo to NC number
+            #Convert chr accNo to NC number
             variant = converter.correctChrVariant(variant)
 
             if variant :
@@ -513,11 +513,13 @@ class PositionConverter:
                 if ":c." in variant:
                     # Do the c2chrom dance
                     variant = converter.c2chrom(variant)
+
+                attr["gName"] = variant
+
                 if variant and ":g." in variant:
                     # Do the g2c dance
                     variants = converter.chrom2c(variant, "dict")
                     if variants:
-                        attr["gName"] = variant
                         output = ["%-10s:\t%s" % (key[:10], "\n\t\t".join(value))\
                                   for key, value in variants.items()]
                         attr["cNames"].extend(output)

templates/converter.html

@@ -52,6 +52,7 @@
         <br>
         <b>Chromosomal Variant:</b><br>
         <pre><div tal:replace = "structure string:${gName}<br>"></div></pre>
+        <b tal:condition = "not:cNames">No transcripts found in mutation region</b><br><br>
       </div>
 
       <div tal:condition = "cNames">