Add checkSyntax to SOAP tools

git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/trunk@468 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1

extras/soap-tools/checkSyntax.py

+#!/usr/bin/env python
+"""
+Run the Mutalyzer syntaxchecker on a variant description.
+
+Usage:
+  {command} description
+
+  description: Variant description to check.
+
+The syntaxchecker results are retrieved from the Mutalyzer SOAP webservice and
+printed to standard output.
+"""
+
+
+from mutalyzer.util import monkey_patch_suds; monkey_patch_suds()
+
+import sys
+from suds.client import Client
+
+from mutalyzer.util import format_usage
+
+
+WSDL_LOCATION = 'http://localhost/mutalyzer/services/?wsdl'
+
+
+def main(description):
+    """
+    Run the Mutalyzer syntaxchecker and print results to standard output.
+    """
+    service = Client(WSDL_LOCATION, cache=None).service
+    result = service.checkSyntax(description)
+
+    if result.valid:
+        print 'Syntax OK!'
+    else:
+        print 'Syntax NOT OK:'
+        for message in result.messages.SoapMessage:
+            print message.message
+
+
+if __name__ == '__main__':
+    if len(sys.argv) < 2:
+        print format_usage()
+        sys.exit(1)
+    main(sys.argv[1])