Add chromAccession.py to SOAP tools

git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/trunk@574 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1

extras/soap-tools/chromAccession.py

+#!/usr/bin/env python
+"""
+Get chromosome accession number from a Mutalyzer installation.
+
+Usage:
+  {command} chromosome [build]
+
+  chromosome: Chromosome to get accession number for, e.g. 'chr2'.
+  build: Human genome build, 'hg18' or 'hg19' (default: 'hg19').
+
+The accession number is retrieved from the Mutalyzer SOAP webservice and
+printed to standard output.
+"""
+
+
+from mutalyzer.util import monkey_patch_suds; monkey_patch_suds()
+
+import sys
+from suds.client import Client
+
+from mutalyzer.util import format_usage
+
+
+WSDL_LOCATION = 'http://localhost/mutalyzer/services/?wsdl'
+
+
+def main(chromosome, build='hg19'):
+    """
+    Get accession number and print it to standard output.
+    """
+    service = Client(WSDL_LOCATION, cache=None).service
+    result = service.chromAccession(build=build, name=chromosome)
+
+    if result:
+        print 'Chromosome accession number: %s' % str(result)
+
+
+if __name__ == '__main__':
+    if len(sys.argv) < 2:
+        print format_usage()
+        sys.exit(1)
+    main(*sys.argv[1:])

extras/soap-tools/mappingInfo.py

@@ -22,8 +22,7 @@ from suds.client import Client
 from mutalyzer.util import format_usage
 
 
-#WSDL_LOCATION = 'http://localhost/mutalyzer/services/?wsdl'
-WSDL_LOCATION = 'https://mutalyzer.nl/services/?wsdl'
+WSDL_LOCATION = 'http://localhost/mutalyzer/services/?wsdl'
 
 
 def main(transcript, variant, build='hg19'):
@@ -34,7 +33,6 @@ def main(transcript, variant, build='hg19'):
     result = service.mappingInfo(LOVD_ver='3.0-beta-06', build=build,
                                  accNo=transcript, variant=variant)
 
-    print result
     if result:
         print 'Genomic start: %s' % result.start_g
         print 'Genomic end: %s' % result.end_g