Major fix for the batch runs

Mutalyzer.py
    * Updated the batch output generator

handler.py
    * Make result file downloadable

webservice.py
    * Make webservice compatible with the new Mapper module

VarInfo.py
    * Updated functions to reflect new Mapper module

index.py
    * Added a redirect option to move get messages to the check form
    * Updated check to use the Session from redirect
    * implented __checkInt to catch user errors in upload
    * Added a progress option to get updates about batch progress
    * updated batch to show batch progress after submit

#Templates
interface.js
    * Added the AJAX request to get a batch progress counter
    * Started the linkify to change all Mutalyzer instances to clickable links

batch.html
    * Added a hidden form to support the batch progress

gbupload.html
    * Display Errors 



#Modules
Output.py
    * Added the getMessagesWithErrorCode

LRGParser.py
    * Made the seq a BioSequence for the restriction function

Retriever.py
    * Added BatchFlags support to prevent jobs to hang at the same problem
    * Updated some returnvalues to reflect errors

Scheduler.py
    * Implemented the Flags to skip or alter other batch entries
    * Cleaned up the nameCheckerbatch significantly
    * Added a try/except clause around the namechecker to prevent batchhangs
    * Changed output fileextension to txt

Mapper.py
    * Cleaned up Module
    * mainTranscript function updated to reflect webservice needs
    * Correct errors when retrieving fields from DB in _FieldsFromDb

Db.py
    * Impemented entriesLeftForJob to get info about how a job is doing
    * Added updateBatchDb and skipBatchDb to skip/alter batch entries




git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/trunk@71 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1