Some reorganisation. Added post-install script.

git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/branches/refactor-mutalyzer-branch@252 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1

bin/check.py → bin/mutalyzer

@@ -12,9 +12,10 @@ Usage:
 
 import sys
 import os
-import Mutalyzer
-from Modules import Output
-from Modules import Config
+
+import mutalyzer
+from mutalyzer.output import Output
+from mutalyzer.config import Config
 
 
 def main(cmd):
@@ -23,8 +24,8 @@ def main(cmd):
 
     @todo: documentation
     """
-    C = Config.Config()
-    O = Output.Output(__file__, C.Output)
+    C = Config()
+    O = Output(__file__, C.Output)
 
     O.addMessage(__file__, -1, "INFO", "Received variant " + cmd)
 

bin/run_tests

-#!/bin/sh
-
-# This is just an example of running the test suite and producing a HTML
-# coverage report.
-# Something like this should eventually be used on the test server as a
-# post-commit hook.
-
-nosetests --with-coverage --cover-package mutalyzer --cover-html --cover-html-dir=/tmp/nosecover -v

extras/post-install.sh

+#!/bin/bash
+
+# Post-install script for Mutalyzer. Run after the setuptools installation
+# (python setup.py install).
+#
+# Usage (from the source root directory):
+#   sudo bash extras/post-install.sh
+
+# Todo:
+# - Database setup
+# - Copy doc to /usr/share/doc
+
+if [ ! -f /etc/mutalyzer/config ]; do
+    mkdir -p /etc/mutalyzer
+    cp extras/config.example /etc/mutalyzer/config
+    chmod -R u=rwX,go=rX /etc/mutalyzer
+fi
+
+touch /var/log/mutalyzer.log
+chown www-data:www-data /var/log/mutalyzer.log
+chmod u=rw,go=r /var/log/mutalyzer.log
+
+mkdir -p /var/cache/mutalyzer
+chown -R www-data:www-data /var/cache/mutalyzer
+chmod -R u=rwX,go=rX /var/cache/mutalyzer
+
+if [ ! -f /etc/init.d/mutalyzer-batchd ]; do
+    cp extras/init.d/mutalyzer-batchd /etc/init.d/mutalyzer-batchd
+    chmod u=rwx,go=rx /etc/init.d/mutalyzer-batchd
+fi

setup.py

@@ -17,7 +17,7 @@ setup(
     platforms=['any'],
     packages=find_packages(exclude=['doc', 'extras', 'tests']),
     include_package_data=True,
-    scripts=['bin/mutalyzer-batchd'],
+    scripts=['bin/mutalyzer', 'bin/mutalyzer-batchd'],
     zip_safe=False
 )