PEP8.

tests/test_describe.py

@@ -18,12 +18,11 @@ class TestDescribe(MutalyzerTest):
     """
     Test the mutalyzer.describe module.
     """
-
     def _single_variant(self, sample, expected):
         """
         General single variant test.
         """
-        reference = "ACGTCGATTCGCTAGCTTCGGGGGATAGATAGAGATATAGAGAT"
+        reference = 'ACGTCGATTCGCTAGCTTCGGGGGATAGATAGAGATATAGAGAT'
 
         result = describe.describe_dna(reference, sample)
         assert result[0].type == expected[0]
@@ -35,6 +34,7 @@ class TestDescribe(MutalyzerTest):
         assert result[0].inserted[0].sequence == expected[6]
         assert unicode(result[0]) == expected[7]
 
+
     def test1(self):
         """
         Test 1.
@@ -44,6 +44,7 @@ class TestDescribe(MutalyzerTest):
             'ATGATTTGATCAGATACATGTGATACCGGTAGTTAGGACAA')
         assert unicode(result) == '[5_6insTT;17del;26A>C;35dup]'
 
+
     def test2(self):
         """
         Test 2.
@@ -53,6 +54,7 @@ class TestDescribe(MutalyzerTest):
             'TAAGCACCAGGAGTCCATGAAGAAGCTGGATCCTCCCATGGAATCCCCTACTCTACTGTG')
         assert unicode(result) == '[26A>C;30C>A;35G>C]'
 
+
     def test3(self):
         """
         Test 3.
@@ -62,6 +64,7 @@ class TestDescribe(MutalyzerTest):
             'TAAGCACCAGGAGTCCATGAAGAAGCCATGTCCTGCCATGGAATCCCCTACTCTA')
         assert unicode(result) == '[26_29inv;30C>G]'
 
+
     def test4(self):
         """
         Test 4.
@@ -71,100 +74,114 @@ class TestDescribe(MutalyzerTest):
             'TAAGCACCAGGAGTCCATGAAGAAGCCATGTCCTGCCATGAATCCCCTACTCTA')
         assert unicode(result) == '[26_29inv;30C>G;41del]'
 
+
     def test5(self):
         """
         Test 5.
         """
-        self._single_variant("ACGTCGATTCGCTAGCTTCGGGGGATAGATAGAGATATAGAGAT",
-            ("none", 0, 0, 0, 0, "", "", "="))
+        self._single_variant('ACGTCGATTCGCTAGCTTCGGGGGATAGATAGAGATATAGAGAT',
+            ('none', 0, 0, 0, 0, '', '', '='))
+
 
     def test6(self):
         """
         Test 6.
         """
-        self._single_variant("ACGTCGGTTCGCTAGCTTCGGGGGATAGATAGAGATATAGAGAT",
-            ("subst", 7, 7, 7, 7, "A", "G", "7A>G"))
+        self._single_variant('ACGTCGGTTCGCTAGCTTCGGGGGATAGATAGAGATATAGAGAT',
+            ('subst', 7, 7, 7, 7, 'A', 'G', '7A>G'))
+
 
     def test7(self):
         """
         Test 7.
         """
-        self._single_variant("ACGTCGTTCGCTAGCTTCGGGGGATAGATAGAGATATAGAGAT",
-            ("del", 7, 7, 6, 7, "A", "", "7del"))
+        self._single_variant('ACGTCGTTCGCTAGCTTCGGGGGATAGATAGAGATATAGAGAT',
+            ('del', 7, 7, 6, 7, 'A', '', '7del'))
+
 
     def test8(self):
         """
         Test 8.
         """
-        self._single_variant("ACGTCGTCGCTAGCTTCGGGGGATAGATAGAGATATAGAGAT",
-            ("del", 7, 8, 6, 7, "AT", "", "7_8del"))
+        self._single_variant('ACGTCGTCGCTAGCTTCGGGGGATAGATAGAGATATAGAGAT',
+            ('del', 7, 8, 6, 7, 'AT', '', '7_8del'))
+
 
     def test9(self):
         """
         Test 9.
         """
-        self._single_variant("ACGTCGCATTCGCTAGCTTCGGGGGATAGATAGAGATATAGAGAT",
-            ("ins", 6, 7, 7, 7, "", "C", "6_7insC"))
+        self._single_variant('ACGTCGCATTCGCTAGCTTCGGGGGATAGATAGAGATATAGAGAT',
+            ('ins', 6, 7, 7, 7, '', 'C', '6_7insC'))
+
 
     def test10(self):
         """
         Test 10.
         """
-        self._single_variant("ACGTCGCCATTCGCTAGCTTCGGGGGATAGATAGAGATATAGAGAT",
-            ("ins", 6, 7, 7, 8, "", "CC", "6_7insCC"))
+        self._single_variant('ACGTCGCCATTCGCTAGCTTCGGGGGATAGATAGAGATATAGAGAT',
+            ('ins', 6, 7, 7, 8, '', 'CC', '6_7insCC'))
+
 
     def test11(self):
         """
         Test 11.
         """
-        self._single_variant("ACGTCGAATTCGCTAGCTTCGGGGGATAGATAGAGATATAGAGAT",
-            ("dup", 7, 7, 8, 8, "", "A", "7dup"))
+        self._single_variant('ACGTCGAATTCGCTAGCTTCGGGGGATAGATAGAGATATAGAGAT',
+            ('dup', 7, 7, 8, 8, '', 'A', '7dup'))
+
 
     def test12(self):
         """
         Test 12.
         """
-        self._single_variant("ACGTCGAGATTCGCTAGCTTCGGGGGATAGATAGAGATATAGAGAT",
-            ("dup", 6, 7, 8, 9, "", "GA", "6_7dup"))
+        self._single_variant('ACGTCGAGATTCGCTAGCTTCGGGGGATAGATAGAGATATAGAGAT',
+            ('dup', 6, 7, 8, 9, '', 'GA', '6_7dup'))
+
 
     def test13(self):
         """
         Test 13.
         """
-        self._single_variant("ACGTCGACGATTCGCTAGCTTCGGGGGATAGATAGAGATATAGAGAT",
-            ("dup", 5, 7, 8, 10, "", "CGA", "5_7dup"))
+        self._single_variant('ACGTCGACGATTCGCTAGCTTCGGGGGATAGATAGAGATATAGAGAT',
+            ('dup', 5, 7, 8, 10, '', 'CGA', '5_7dup'))
+
 
     def test14(self):
         """
         Test 14.
         """
-        self._single_variant("ACGTCGCGAATCTAGCTTCGGGGGATAGATAGAGATATAGAGAT",
-            ("inv", 7, 11, 7, 11, "ATTCG", "CGAAT", "7_11inv"))
+        self._single_variant('ACGTCGCGAATCTAGCTTCGGGGGATAGATAGAGATATAGAGAT',
+            ('inv', 7, 11, 7, 11, 'ATTCG', 'CGAAT', '7_11inv'))
+
 
     def test15(self):
         """
         Test 15.
         """
-        self._single_variant("ACGTCGCCTTCGCTAGCTTCGGGGGATAGATAGAGATATAGAGAT",
-            ("delins", 7, 7, 7, 8, "A", "CC", "7delinsCC"))
+        self._single_variant('ACGTCGCCTTCGCTAGCTTCGGGGGATAGATAGAGATATAGAGAT',
+            ('delins', 7, 7, 7, 8, 'A', 'CC', '7delinsCC'))
+
 
     def test16(self):
         """
         Test 16.
         """
-        self._single_variant("ACGTCGATTCGCTAGCTTCGTTTTGATAGATAGAGATATAGAGAT",
-            ("delins", 21, 23, 21, 24, "GGG", "TTTT", "21_23delinsTTTT"))
+        self._single_variant('ACGTCGATTCGCTAGCTTCGTTTTGATAGATAGAGATATAGAGAT',
+            ('delins', 21, 23, 21, 24, 'GGG', 'TTTT', '21_23delinsTTTT'))
+
 
     def test17(self):
         """
         Test 17.
         """
-        self._single_variant("ACGTCTCTTCGCTAGCTTCGGGGGATAGATAGAGATATAGAGAT",
-            ("inv", 6, 7, 6, 7, "GA", "TC", "6_7inv"))
+        self._single_variant('ACGTCTCTTCGCTAGCTTCGGGGGATAGATAGAGATATAGAGAT',
+            ('inv', 6, 7, 6, 7, 'GA', 'TC', '6_7inv'))
+
 
     def test18(self):
         """
         Test 18.
         """
-        self._single_variant("ACGTCGTCTCGCTAGCTTCGGGGGATAGATAGAGATATAGAGAT",
-            ("delins", 7, 8, 7, 8, "AT", "TC", "7_8delinsTC"))
+        self._single_variant('ACGTCGTCTCGCTAGCTTCGGGGGATAGATAGAGATATAGAGAT',
+            ('delins', 7, 8, 7, 8, 'AT', 'TC', '7_8delinsTC'))