Fix chromosome slicing on reverse complement

git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/trunk@474 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1

mutalyzer/templates/gbupload.html

@@ -12,29 +12,29 @@
         }
       </script>
     <center><h3>Reference File Loader</h3></center>
-    The Reference File Loader allows you to use your own reference 
+    The Reference File Loader allows you to use your own reference
     sequence when no appropriate RefSeq, GenBank or LRG file is available.
     <br>
     Please select one of the options below to upload or retrieve your reference
     sequence (maximum size is <span tal:content = "maxSize"></span> megabytes):
     <br>
     <br>
-    <form name='invoer' enctype="multipart/form-data" 
+    <form name='invoer' enctype="multipart/form-data"
           action="" method="post">
       <table border="0" cellpadding="0" cellspacing="0">
         <tr valign="top">
           <th width="100" style="text-align: left; padding-left : 70px">Options</th>
           <td>
-            <input type="radio" name="invoermethode" value='file' checked 
+            <input type="radio" name="invoermethode" value='file' checked
                    onClick="updateVisibility();">
             The reference sequence file is a local file<br>
-            <input type="radio" name="invoermethode" value='url' 
+            <input type="radio" name="invoermethode" value='url'
                    onClick="updateVisibility();">
             The reference sequence file can be found at the following URL<br>
-            <input type="radio" name="invoermethode" value='gene' 
+            <input type="radio" name="invoermethode" value='gene'
                    onClick="updateVisibility();">
             Retrieve part of the reference genome for a (HGNC) gene symbol<br>
-            <input type="radio" name="invoermethode" value='chr' 
+            <input type="radio" name="invoermethode" value='chr'
                    onClick="updateVisibility();">
             Retrieve a range of a chromosome<br>
           </td>
@@ -49,7 +49,7 @@
               <input type='file' name="bestandsveld"><br>
             </span>
             <span id="url_label">
-              <i>Please enter the URL of the GenBank file in plain text 
+              <i>Please enter the URL of the GenBank file in plain text
                  (including http://)</i>
               <br>
               <input type='text' name="urlveld"><br>
@@ -72,7 +72,7 @@
                 </tr>
                 	<tr><td>Number of 3' flanking nucleotides</td>
                   <td><input type='text' name="threeutr" value="2000"></td>
-                </tr>               	
+                </tr>
              	</table>
             </span>
             <span id="range_label">
@@ -96,16 +96,16 @@
                   <td>
                     <select name = "orientation">
                       <option value="1">Forward</option>
-                      <option value="-1">Reverse</option>
+                      <option value="2">Reverse</option>
                     </select>
                   </td>
                 </tr>
               </table>
             </span>
             <input type='hidden' name="method" value="gbupload">
-            <input type='hidden' name="client" value="human">  
+            <input type='hidden' name="client" value="human">
             <input type='hidden' name="location" value="file">
-            <input type='hidden' name="bestandsnaam" 
+            <input type='hidden' name="bestandsnaam"
                    value="">
           </td>
         </tr>
@@ -127,7 +127,7 @@
       <b>Output:</b><br>
       <br>
       Your reference sequence was loaded successfully.<br>
-      You now can use mutalyzer with the following accession number as 
+      You now can use mutalyzer with the following accession number as
       reference: <b tal:content = "UD"></b><br>
       <a tal:attributes = "href string:Reference/${UD}.gb">
         Download this reference sequence.