Merged 236 from trunk.

git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/branches/refactor-mutalyzer-branch@242 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1

bin/find_log_bugs

+#!/usr/bin/env python
+
+"""
+Search log for bugs.
+
+Finds occurrences of 'Received' in the log file that are not followed by an
+occurrence of 'Finished'. These are probably runs of the namechecker that
+crashed.
+"""
+
+
+import os
+import site
+
+# Todo: Get this from the configuration file
+root_dir = os.path.split(os.path.dirname(__file__))[0]
+site.addsitedir(root_dir)
+# Todo: Fix Mutalyzer to not depend on working directory
+if not __name__ == '__main__':
+        os.chdir(root_dir)
+
+from mutalyzer.config import Config
+
+
+config = Config()
+handle = open(config.Output.log, 'r')
+
+scanning = False
+line = handle.readline()
+
+while line:
+    if not scanning:
+        if ' Received ' in line:
+            message = line
+            scanning = True
+    else:
+        if ' Received ' in line:
+            print message,
+            scanning = False
+        if ' Finished ' in line:
+            scanning = False
+    line = handle.readline()
+
+handle.close()