Move presentations and paper to separate repositories

The paper (from `Mutalyzer 2.0/`) is now in the `mutalyzer-manuscript`
repository, while all presentations, posters and abstracts are now in
the `mutalyzer-presentations` repository.

doc/Gen2Phen_Presentation_Skeleton/Makefile

-../LUMC_Presentation_Skeleton/Makefile
\ No newline at end of file

doc/Gen2Phen_Presentation_Skeleton/README

-../LUMC_Presentation_Skeleton/README
\ No newline at end of file

doc/Gen2Phen_Presentation_Skeleton/mkpres.sh

-#!/bin/sh
-
-skel="../Gen2Phen_Presentation_Skeleton"
-
-if ! [ -e $skel ]; then
-  echo Make sure you are in an empty directory and $skel exists.
-  exit
-fi
-
-if [ -f presentation.tex ]; then
-  echo Make sure you are in an empty directory and $skel exists.
-  exit
-fi
-
-ln -s $skel/bg.eps
-ln -s $skel/Makefile
-cp $skel/presentation.tex .

doc/Gen2Phen_Presentation_Skeleton/presentation.tex

-% LUMC presentation template by J. F. J. Laros.
-% Last alteration on 15-10-2009.
-%
-% The packages texlive-latex-recommended, texlive-latex-base and
-%   texlive-latex-extra should be installed.
-%
-
-% Alter these four lines for a new presentation.
-\providecommand{\me}{Jeroen F. J. Laros}
-\providecommand{\myFooter}{5th GA Meeting, Aveiro 11-12 January 2010}
-\providecommand{\myTitle}{Testing LaTeX slides}
-
-% Now go to %%% BEGIN PRESENTATION %%%
-
-\documentclass[a4, portrait]{seminar}
-
-\usepackage{semcolor} % For coloured text.
-\usepackage{slidesec} % For section headings.
-\usepackage{newcent}  % This is a better font for presentations.
-\input{seminar.bug}
-
-\usepackage{graphicx} % For pictures.
-\usepackage{fancybox} % For the background picture.
-
-\newslideframe{PRES}{ % Template for the body.
-  \boxput{
-    \rput(-0.24, 0){\includegraphics[angle=90, scale=.485]{bg}}
-  }{
-    \rput[l]{90}(8.57, -1.3){\scriptsize{\theslide/\pageref{LastPage}}}
-    \rput[r]{90}(8.57, 12.0){\scriptsize{\myFooter}}
-    #1
-  }
-}
-
-\renewcommand{\makeslideheading}[1]{ % Put the slide headings on top.
-  \rput[l](-1.6, .90){
-      \textbf{
-        \textcolor{white}{#1}
-    }
-  }
-  \newline
-}
-
-\pagestyle{empty}
-
-\begin{document}
-
-\slideframe{PRES}
-
-\begin{slide}
-%\setcounter{slide}{0}
-\vspace*{1.5cm}
-\begin{center}
-{\bf\Large{\myTitle}}\\
-\vfill
-{\bf
-  \small{\me}\\
-  \small{Department of Human Genetics}\\
-  \small{Center for Human and Clinical Genetics}
-  \small{LUMC}
-}
-\vspace{1.1cm}
-\end{center}
-\end{slide}
-
-
-%%% BEGIN PRESENTATION %%%
-
-\begin{slide}
-\slideheading{Topic 1}
-Text goes here...
-\vfill
-\end{slide}
-
-\begin{slide}
-\slideheading{Topic 1}
-And more text..
-\vfill
-\end{slide}
-
-\begin{slide}
-\slideheading{Topic 2}
-And yet more text..
-\vfill
-\end{slide}
-
-\begin{slide}
-\slideheading{Questions?}
-\vfill
-\label{LastPage}
-\end{slide}
-
-\end{document}

doc/Gen2Phen_Presentation_Skeleton/src/gen_2_phen_logo_print.png

-../../LUMC_Presentation_Skeleton/src/gen_2_phen_logo_print.png
\ No newline at end of file

doc/Gen2Phen_Presentation_Skeleton/src/lumc_logo2.png

-../../LUMC_Presentation_Skeleton/src/lumc_logo2.png
\ No newline at end of file

doc/LUMC_Presentation_Skeleton/Makefile

-# General Makefile for LaTeX documents by J. F. J. Laros.
-# Last alteration on 15-08-2010.
-#
-# The packages texlive-base-bin, texlive-latex-base and ghostscript should
-#   be installed.
-#
-
-LATEX = latex
-BIBTEX = bibtex
-DVIPS = dvips
-PS2PDF = ps2pdf14
-
-SRC := $(shell grep -H '\\begin{document' *.tex | cut -f 1 -d '.')
-
-all: $(SRC)
-
-$(SRC): $(SRC).tex
-	$(LATEX) $^
-	$(LATEX) $^ 
-	$(DVIPS) $(SRC).dvi -o $(SRC).ps
-
-bib: $(SRC).tex
-	$(LATEX) $^
-	$(BIBTEX) $(SRC)
-
-release: $(SRC) clean
-	$(PS2PDF) $(SRC).ps
-	rm -f $(SRC).ps
-
-clean:
-	rm -f *.aux $(SRC).blg $(SRC).dvi $(SRC).log
-
-distclean: clean
-	rm -f $(SRC).ps $(SRC).pdf

doc/LUMC_Presentation_Skeleton/README

-## Installation ##
-#
-The packages texlive-base-bin, texlive-latex-base, texlive-latex-recommended, 
-texlive-latex-extra, texlive-fonts-recommended and ghostscript should be
-installed.
-
-We assume that you have a directory where you want to make your presentations,
-in this directory the template directory `skel' should contain all the template
-files.
-
-
-## Making a new presentation ##
-#
-To make a new presentation, create an empty directory in the presentations
-directory, let's say newpresentation. Now do:
----
-cd newpresentation
-sh ../skel/mkpres.sh
----
-
-## Compiling ##
-#
-Edit presentation.tex..
-
-To make a postscript file, type `make'.
-For a pdf, type `make release' (this will also throw away all temporary files).
-To clean everything except the ps and pdf files, type `make clean'.
-To clean everything, type `make distclean' (of course the source will not be
-  thrown away).

doc/LUMC_Presentation_Skeleton/mkpres.sh

-#!/bin/sh
-
-skel="../LUMC_Presentation_Skeleton"
-
-if ! [ -e $skel ]; then
-  echo Make sure you are in an empty directory and $skel exists.
-  exit
-fi
-
-if [ -f presentation.tex ]; then
-  echo Make sure you are in an empty directory and $skel exists.
-  exit
-fi
-
-ln -s $skel/bg.eps
-ln -s $skel/bg2.eps
-ln -s $skel/Gen2Phen.eps
-ln -s $skel/Makefile
-cp $skel/presentation.tex .

doc/LUMC_Presentation_Skeleton/presentation.tex

-% LUMC presentation template by J. F. J. Laros.
-% Last alteration on 15-10-2009.
-%
-% The packages texlive-latex-recommended, texlive-latex-base and
-%   texlive-latex-extra should be installed.
-%
-
-% Alter these four lines for a new presentation.
-\providecommand{\me}{Jeroen F. J. Laros}
-\providecommand{\myTitle}{Testing LaTeX slides}
-\providecommand{\myConference}{Work discussion}
-\providecommand{\myDate}{Tuesday, 7 July 2009}
-
-% Now go to %%% BEGIN PRESENTATION %%%
-
-\documentclass[a4, portrait]{seminar}
-
-\usepackage{semcolor} % For coloured text.
-\usepackage{slidesec} % For section headings.
-\usepackage{newcent}  % This is a better font for presentations.
-\input{seminar.bug}
-
-\usepackage{graphicx} % For pictures.
-\usepackage{fancybox} % For the background picture.
-
-\definecolor{Blue}{rgb}{0.,0.11372,0.37647} % Custom LUMC color
-
-\renewcommand{\labelitemi}{\textcolor{white}{$\bullet$}} % Make the bullets for
-\renewcommand{\labelitemii}{\textcolor{white}{--}}       % itemising white.
-\renewcommand{\labelitemiii}{\textcolor{white}{$\ast$}}
-\renewcommand{\labelitemiv}{\textcolor{white}{$\circ$}}
-\renewcommand{\labelenumi}{\textcolor{white}{\arabic{enumi}.}}
-
-\newslideframe{TITLE}{ % Template for the title.
-  \boxput{
-    \rput(0, 0){\includegraphics[angle=90, scale=.485]{bg}}
-  }{#1}
-}
-
-\newslideframe{PRES}{ % Template for the body.
-  \boxput{
-    \rput(0, 0){\includegraphics[angle=90, scale=.485]{bg2}}
-  }{
-    \textcolor{Blue}{
-    \rput[l]{90}(8.57, -1.5){\scriptsize{\myConference}} 
-    \rput[c]{90}(8.57, 5.35){\scriptsize{\theslide/\pageref{LastPage}}}
-    \rput[r]{90}(8.57, 12.2){\scriptsize{\myDate}}
-    }
-    \white #1
-  }
-}
-
-\renewcommand{\makeslideheading}[1]{ % Put the slide headings on top.
-  \rput[l](0.2, .40){
-      \textbf{
-        \textcolor{Blue}{#1}
-    }
-  }
-  \newline
-}
-
-\pagestyle{empty}
-
-\begin{document}
-
-\slideframe{TITLE} % Use the title template.
-
-\begin{slide}
-  \setcounter{slide}{0}
-  \vspace*{1.5cm}
-  \begin{center}
-    {\bf\Large{\myTitle}}\\
-    \vfill
-    \textcolor{Blue}{
-      {\bf
-        \small{\me}\\
-        \small{Department of Human Genetics}\\
-        \small{Center for Human and Clinical Genetics}
-      }
-    }
-    \vspace{1.1cm}
-  \end{center}
-\end{slide}
-
-\slideframe{PRES} % Use the body template.
-
-%%% BEGIN PRESENTATION %%%
-
-\begin{slide}
-  \slideheading{Topic 1}
-  Text goes here...
-  \vfill
-\end{slide}
-
-\begin{slide}
-  \slideheading{Topic 1}
-  And more text..
-  \vfill
-\end{slide}
-
-\begin{slide}
-  \slideheading{Topic 2}
-  And yet more text..
-  \vfill
-\end{slide}
-
-\begin{slide}
-  \rput(11.4,0.6){\includegraphics[scale=0.1]{Gen2Phen}}
-  \slideheading{Questions?}
-  \vfill
-  \label{LastPage}
-\end{slide}
-
-\end{document}