Rename 'webservice' to 'web service' (for Peter)

git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/trunk@601 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1

README

@@ -20,7 +20,7 @@ Unit tests
 ----------
 
 The unit tests depend on a running batch daemon, webserver, and SOAP
-webservice:
+web service:
 
     sudo /etc/init.d/mutalyzer-batchd start
     sudo /etc/init.d/apache2 start
@@ -135,8 +135,8 @@ Todo list:
   for example jinja.
 - Develop a large test suite.
 - Create a web interface url to watch the progress of a batch job.
-- Create webservices for the batch jobs (steal ideas from Jeroen's DVD
-  webservice).
+- Create web services for the batch jobs (steal ideas from Jeroen's DVD
+  web service).
 - Use virtualenv?
 - Use SQLAlchemy?
 - Password for MySQL user.

bin/mutalyzer-json-service.wsgi

 #!/usr/bin/env python
 """
-WSGI interface to the Mutalyzer HTTP/RPC+JSON webservice.
+WSGI interface to the Mutalyzer HTTP/RPC+JSON web service.
 
 The WSGI interface is exposed through the module variable 'application'.
 

bin/mutalyzer-soap-service.wsgi

 #!/usr/bin/env python
 """
-WSGI interface to the Mutalyzer SOAP webservice.
+WSGI interface to the Mutalyzer SOAP web service.
 
 The WSGI interface is exposed through the module variable 'application'.
 

extras/apache/mutalyzer.conf

@@ -11,7 +11,7 @@ Alias /mutalyzer/base /var/www/mutalyzer/base
 WSGIDaemonProcess mutalyzer processes=2 threads=15 maximum-requests=10000
 WSGIProcessGroup mutalyzer
 
-# SOAP/1.1 webservice
+# SOAP/1.1 web service
 WSGIScriptAlias /mutalyzer/services <MUTALYZER_BIN_SOAP_SERVICE>
 <Directory /mutalyzer/services>
     Order deny,allow
@@ -19,7 +19,7 @@ WSGIScriptAlias /mutalyzer/services <MUTALYZER_BIN_SOAP_SERVICE>
     Options -Indexes
 </Directory>
 
-# HTTP/RPC+JSON webservice
+# HTTP/RPC+JSON web service
 WSGIScriptAlias /mutalyzer/json <MUTALYZER_BIN_JSON_SERVICE>
 <Directory /mutalyzer/json>
     Order deny,allow

extras/migrations/007-apache-json-webservice.migration

 #!/bin/bash
 
-# Add HTTP/RPC+JSON webservice entry to Apache configuration.
+# Add HTTP/RPC+JSON web service entry to Apache configuration.
 #
 # Usage:
 #   ./007-apache-json-webservice.migration [migrate]

extras/soap-tools/checkSyntax.py

@@ -7,8 +7,8 @@ Usage:
 
   description: Variant description to check.
 
-The syntaxchecker results are retrieved from the Mutalyzer SOAP webservice and
-printed to standard output.
+The syntaxchecker results are retrieved from the Mutalyzer SOAP web service
+and printed to standard output.
 """
 
 

extras/soap-tools/chromAccession.py

@@ -8,7 +8,7 @@ Usage:
   chromosome: Chromosome to get accession number for, e.g. 'chr2'.
   build: Human genome build, 'hg18' or 'hg19' (default: 'hg19').
 
-The accession number is retrieved from the Mutalyzer SOAP webservice and
+The accession number is retrieved from the Mutalyzer SOAP web service and
 printed to standard output.
 """
 

extras/soap-tools/descriptionExtract.py

@@ -9,8 +9,8 @@ Usage:
   reference: Reference DNA sequence.
   observed: Observed DNA sequence.
 
-The extracted HGVS description is retrieved from the Mutalyzer SOAP webservice
-and printed to standard output.
+The extracted HGVS description is retrieved from the Mutalyzer SOAP web
+service and printed to standard output.
 """
 
 

extras/soap-tools/getCache.py

@@ -7,8 +7,8 @@ Usage:
 
   days: Retrieve entries of at most this number of days old.
 
-The cache entries are retrieved from the Mutalyzer SOAP webservice and printed
-to standard output.
+The cache entries are retrieved from the Mutalyzer SOAP web service and
+printed to standard output.
 """
 
 

extras/soap-tools/getGeneAndTranscript.py

@@ -9,7 +9,7 @@ Usage:
   transcript_reference: Reference of the transcript to lookup.
 
 The transcript and product name are retrieved from the Mutalyzer SOAP
-webservice and printed to standard output.
+web service and printed to standard output.
 """
 
 

extras/soap-tools/getTranscripts.py

@@ -9,7 +9,7 @@ Usage:
   position: Position to lookup overlapping transcripts for.
 
 The transcript accession numbers are retrieved from the Mutalyzer SOAP
-webservice and printed to standard output.
+web service and printed to standard output.
 """
 
 

extras/soap-tools/getTranscriptsAndInfo.py

@@ -9,8 +9,8 @@ Usage:
       example 'AL449423.14'.
   gene: Optionally restrict results to transcripts for this gene.
 
-The transcript information is retrieved from the Mutalyzer SOAP webservice and
-printed to standard output.
+The transcript information is retrieved from the Mutalyzer SOAP web service
+and printed to standard output.
 """
 
 

extras/soap-tools/getTranscriptsByGeneName.py

@@ -8,7 +8,7 @@ Usage:
   gene: Gene name to lookup transcripts for.
 
 The transcript accession numbers are retrieved from the Mutalyzer SOAP
-webservice and printed to standard output.
+web service and printed to standard output.
 """
 
 

extras/soap-tools/getTranscriptsMapping.py

@@ -11,8 +11,8 @@ Usage:
   pos2: End of chromosomal region, e.g. 230938269.
   tolerant: Optionally set region matching to be tolerant, e.g. 1.
 
-The transcript information is retrieved from the Mutalyzer SOAP webservice and
-printed to standard output.
+The transcript information is retrieved from the Mutalyzer SOAP web service
+and printed to standard output.
 """
 
 

extras/soap-tools/getdbSNPDescriptions.py

@@ -7,7 +7,7 @@ Usage:
 
   rs_number: A valid dbSNP rs number, e.g. 'rs9919552'.
 
-The HGVS descriptions are retrieved from the Mutalyzer SOAP webservice and
+The HGVS descriptions are retrieved from the Mutalyzer SOAP web service and
 printed to standard output.
 """
 

extras/soap-tools/info.py

@@ -5,7 +5,7 @@ Get static version information from a Mutalyzer installation.
 Usage:
   {command}
 
-The version information is retrieved from the Mutalyzer SOAP webservice and
+The version information is retrieved from the Mutalyzer SOAP web service and
 printed to standard output.
 """
 

extras/soap-tools/mappingInfo.py

@@ -9,7 +9,7 @@ Usage:
   variant: Variant to map, e.g. 'g.112039014G>T'.
   build: Human genome build, 'hg18' or 'hg19' (default: 'hg19').
 
-The mapping information is retrieved from the Mutalyzer SOAP webservice and
+The mapping information is retrieved from the Mutalyzer SOAP web service and
 printed to standard output.
 """
 

extras/soap-tools/numberConversion.py

@@ -9,7 +9,7 @@ Usage:
   description: Variant description to convert.
 
 The converted HGVS description(s) is (are) retrieved from the Mutalyzer SOAP
-webservice and printed to standard output.
+web service and printed to standard output.
 """
 
 

extras/soap-tools/runMutalyzer.py

@@ -8,7 +8,7 @@ Usage:
   description: Variant description to check.
   verbosity: If 'verbose', also output full original and variant sequences.
 
-The namechecker results are retrieved from the Mutalyzer SOAP webservice and
+The namechecker results are retrieved from the Mutalyzer SOAP web service and
 printed to standard output.
 """
 

extras/soap-tools/sliceChromosomeByGene.py

@@ -8,7 +8,7 @@ Usage:
   gene: Gene symbol of the gene to slice.
 
 A slice containing the gene with 5000 upstream bases and 2000 downstream bases
-is created with the Mutalyzer SOAP webservice. The resulting UD number is
+is created with the Mutalyzer SOAP web service. The resulting UD number is
 printed to standard output.
 """