• Vermaat's avatar
    Port Mapping database module to SQLAlchemy · e9bf1bc9
    Vermaat authored
    This introduces a proper notion of genome assemblies. Transcript
    mappings for alle genome assemblies are in the same database, which
    is better for maintenance. Updating transcript mappings is also
    simplified a lot, especially from NCBI mapview files where we now
    require a preprocessing sort on the input file.
    Overall, this port touches a lot of Mutalyzer code, so beware.