• Vermaat's avatar
    Fix mapping info for genes mapped to more than one chromosome · 5896fe3b
    Vermaat authored
    Some genes (e.g. in the PAR) are mapped on both the X and Y chromosomes, but
    are (apart from the chromosome names) indistinguishable from transcripts that
    are mapped using different contigs. Transcripts of the latter type should be
    merged, those of the former type should not be merged.
    Our fix consists of only including exons where positions are consistent with
    the transcript mapping and allowing transcripts to be mapped more than once,
    but only to two different chromosomes.
    This fixes #82.
    git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/trunk@467 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1